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GET Request Example (Life Sciences)

REST Genes Life Science

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In this workflow snippet, we will use the REST service provided by MyGene.info [1,2] (https://mygene.info/) to obtain a list of human genes related to specific hormones. Then, we parse the JSON response into a table that is easy to read. Sometimes, responses come in XML format. We have also included a way to parse XML responses by first converting the JSON response directly to XML. 1. Xin J, Mark A, Afrasiabi C, Tsueng G, Juchler M, Gopal N, Stupp GS, Putman TE, Ainscough BJ, Griffith OL, Torkamani A, Whetzel PL, Mungall CJ, Mooney SD, Su AI, Wu C (2016) High-performance web services for querying gene and variant annotation. Genome Biology 2. Wu C, MacLeod I, Su AI (2013) BioGPS and MyGene.info: organizing online, gene-centric information. Nucl. Acids Res. 41(D1): D561-D565.

External resources

  • MyGene.info

Used extensions & nodes

Created with KNIME Analytics Platform version 4.2.2
  • KNIME Base nodes Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.2.2

  • KNIME Javasnippet Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.2.0

  • KNIME JSON-Processing Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.2.1

  • KNIME REST Client Extension Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.2.0

  • KNIME XML-Processing Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.2.1

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License (CC-BY-4.0)
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