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NodeNode / Manipulator

CometAdapter

Community Nodes OpenMS Identification
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Annotates MS/MS spectra using Comet.

Web Documentation for CometAdapter

Node details

Input ports
  1. Type: URI Object
    in [mzML]
    Input file [mzML]
  2. Type: URI Object
    database [FASTA]
    FASTA file [FASTA]
  3. Type: URI Object
    default_params_file [txt]
    Default Comet params file. All parameters of this take precedence. A template file can be generated using 'comet.exe -p' [txt,opt.]
Output ports
  1. Type: URI Object
    out [idXML]
    Output file [idXML]
  2. Type: URI Object
    pin_out [tsv]
    Output file - for Percolator input [tsv]

Extension

The CometAdapter node is part of this extension:

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