SpectraSTSearchAdapter

Ports Options Views

Type: URI Object

executable []

Path to the SpectraST executable to use; may be empty if the executable is globally available. []
Type: URI Object

spectra_files [mzML,mzXML,mzData,mgf,dta,msp]

File names(s) of spectra to be searched. [mzML,mzXML,mzData,mgf,dta,msp]
Type: URI Object

library_file [splib]

Specify library file. [splib]
Type: URI Object

sequence_database_file [fasta]

The sequence database. [fasta,opt.]
Type: URI Object

search_file [txt,dat]

Only search a subset of the query spectra in the search file [txt,dat,opt.]
Type: URI Object

params_file [params]

Read search options from file. All options set in the file will be overridden by command-line options, if specified. [params,opt.]
Type: URI Object

user_mod_file []

Specify name of user-defined modifications file. Default is "spectrast.usermods". [,opt.]

Type: URI Object

output_files [txt,tsv,xml,pepXML,html]

Output files. Make sure to specify one output file for each input file [txt,tsv,xml,pepXML,html]