- Type: URI Objectin [mzML]Input file containing MS2 spectra [mzML]
- Type: URI Objectdatabase [FASTA]FASTA file or pro file. Non-existing relative file-names are looked up via'OpenMS.ini:id_db_dir' [FASTA]
- Type: URI Objectdefault_config_file [xml]Default X! Tandem configuration file. All parameters of this adapter take precedence over the file - use it for parameters not available here. A template file can be found at 'OpenMS/share/CHEMISTRY/XTandem_default_config.xml'. [xml,opt.]
Node / Manipulator
XTandemAdapter
Node details
Input ports
Output ports
- Type: URI Objectout [idXML]Output file containing search results [idXML]
- Type: URI Objectxml_out [xml]Raw output file directly from X! Tandem. Either 'out' or 'xml_out' are required. They can be used together. [xml]
Extension
The XTandemAdapter node is part of this extension:
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Related workflows & nodes
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basic_peptide_identification
timosachsenberg > GCB 2021 > basic_peptide_identification - Go to item
basic_peptide_identification_with_inference
timosachsenberg > GCB 2021 > basic_peptide_identification_with_inference - Go to item
ProteomicsLFQ_tool_spectral_counting
timosachsenberg > GCB 2021 > ProteomicsLFQ_tool_spectral_counting - Go to item
Peptide identification from mass-spectra
Identify peptides by matching mass-spectra to a candidate protein database. It supports a…openms-team > Blog workflows > Peptide Identification from MS - Go to item
Quantification of protein levels from mass-spectrometry experiments
This workflow performs a quantification of proteins from (label-free) mass-spectrometry d…openms-team > Blog workflows > Protein label-free quantification
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