Generates a pairwise similarity or distance matrix using binary or scaled fingerprints from two sets of molecules.
If the first set is composed of only one probe molecule the result of the calculation is a table containing the similarities of this molecule and the library in the second set.
Backend implementation
$SCHRODINGER/utilities/canvasFPGencanvasFPGen is used to generate the fingerprints for the input molecules.
$SCHRODINGER/utilities/canvasFPMatrix
canvasFPMatrix generates the pairwise similarity or distance matrix from the fingerprints from canvasFPGen.