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Cheminformatics
Schrödinger
Utilities and Converters Fingerprint Based Tools Modeling Filters and Mining Tools
  1. Go to item
    Node / Learner
    AutoQSAR Build Model
    Schrödinger Cheminformatics Modeling
    Generate QSAR models for a chosen property of a set of compounds, and apply the QSAR model to other compounds. Descriptor data an…
    0
    schroedinger
  2. Go to item
    Node / Predictor
    AutoQSAR Predict
    Schrödinger Cheminformatics Modeling
    Choose structures to make predictions for and the model to apply. When the job finishes, the structures with the predicted values…
    0
    schroedinger
  3. Go to item
    Node / Learner
    Bayes Classification Model Building
    Schrödinger Cheminformatics Modeling
    Build a Bayes model from binary or continuous training data that can then be applied to other data sets. Both training set and te…
    0
    schroedinger
  4. Go to item
    Node / Predictor
    Bayes Classification Prediction
    Schrödinger Cheminformatics Modeling
    Predict the dependent variable Y for a set of structures using a previously built Bayes model and the required independent X vari…
    0
    schroedinger
  5. Go to item
    Node / Manipulator
    Canvas Fingerprint Generation
    Schrödinger Cheminformatics Fingerprint Based Tools
    Generate molecular fingerprints Backend implementation utilities/canvasFPGen canvasFPGen is used to implement this node.
    0
    schroedinger
  6. Go to item
    Node / Manipulator
    Combine Canvas Fingerprints
    Schrödinger Cheminformatics Utilities and Converters
    Combines fingerprints for distinct or overlapping sets of molecules. When a molecule appears more than once, the bit sets are com…
    0
    schroedinger
  7. Go to item
    Node / Manipulator
    Concatenate Bitvectors
    Schrödinger Cheminformatics Utilities and Converters
    Concatenates Bitvectors in two columns of input
    0
    schroedinger
  8. Go to item
    Node / Manipulator
    Convert Bitvector to FingerPrint
    Schrödinger Cheminformatics Utilities and Converters
    This node takes Bitvectors and converts them to Canvas FingerPrints. Backend implementation utilities/canvasCSV2FPBinary canvasCS…
    0
    schroedinger
  9. Go to item
    Node / Manipulator
    Convert Fingerprint to Bitvector
    Schrödinger Cheminformatics Utilities and Converters
    Converts a Fingerprint to a Bitvector. By choosing to omit bits using the settings below, the performance of the node will increa…
    0
    schroedinger
  10. Go to item
    Node / Manipulator
    Convert Fingerprint to Table
    Schrödinger Cheminformatics Utilities and Converters
    Extract fingerprints to table format. By choosing to omit bits using the settings below, the performance of the node will increas…
    0
    schroedinger
  11. Go to item
    Node / Manipulator
    Convert Matrix to Table
    Schrödinger Cheminformatics Utilities and Converters
    Converts a binary Canvas Matrix into the output table Backend implementation utilities/canvasPW2CSV canvasPW2CSV is used to imple…
    0
    schroedinger
  12. Go to item
    Node / Manipulator
    Convert Table to FingerPrint
    Schrödinger Cheminformatics Utilities and Converters
    This node inputs a table, which consists of a molecule name and a n-by-m matrix of double precision numbers, where n is the numbe…
    0
    schroedinger
  13. Go to item
    Node / Manipulator
    Convert Table to Matrix
    Schrödinger Cheminformatics Utilities and Converters
    This node inputs a table, which consists of a molecule name and a n-by-n matrix of double precision numbers, where n is the numbe…
    0
    schroedinger
  14. Go to item
    Node / Manipulator
    Dissimilarity Selection (from Matrix)
    Schrödinger Cheminformatics Fingerprint Based Tools
    Dissimilarity Based Compound Selection Backend implementation utilities/canvasDBCS canvasDBCS is used to implement this node.
    0
    schroedinger
  15. Go to item
    Node / Manipulator
    Generate Pairwise Matrix
    Schrödinger Cheminformatics Fingerprint Based Tools
    Calculate a pairwise distance matrix from binary molecular fingerprints generated by the fingerprint Generation node. Backend imp…
    0
    schroedinger
  16. Go to item
    Node / Manipulator
    Generate Pairwise Matrix (2 Inputs)
    Schrödinger Cheminformatics Fingerprint Based Tools
    Calculate a pairwise distance matrix from two sets of binary molecular fingerprints generated by the fingerprint Generation node.…
    0
    schroedinger
  17. Go to item
    Node / Manipulator
    Hierarchical Clustering
    Schrödinger Cheminformatics Fingerprint Based Tools
    Hierarchical Clustering based on a pairwise distance matrix. Available linkage types: single complete average centroid mcquitty w…
    0
    schroedinger
  18. Go to item
    Node / Manipulator
    Hierarchical Clustering Report
    Schrödinger Cheminformatics Fingerprint Based Tools
    Hierarchical Clustering based on molecular fingerprints Available linkage types: single complete average centroid mcquitty ward w…
    0
    schroedinger
  19. Go to item
    Node / Manipulator
    Maximum Common Substructure Search
    Schrödinger Cheminformatics Filters and Mining Tools
    Finds maximum common substructure among a given set of molecules. Backend implementation utilities/canvasMCS canvasMCS is used to…
    0
    schroedinger
  20. Go to item
    Node / Manipulator
    Multi-dimensional Scaling
    Schrödinger Cheminformatics Utilities and Converters
    Multi-dimension scaling driver program Backend implementation utilities/canvasMDS canvasMDS is used to implement this node.
    0
    schroedinger

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