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115 results

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Life Sciences
Education Chemistry Cheminformatics RDKit Interactive View
+4
  1. Go to item
    Workflow
    ML Prototyping for Bioactivity Data
    Cheminformatics Webportal Data Visualization
    +7
    This workflow demonstrates model building for a bioactivity data set with several machine learning methods and binary fingerprint…
    knime > Life Sciences > Events > 2021_03_03_Cheminformatics_with_KNIME_Webinar > ML Prototyping for Bioactivity Data
    6
  2. Go to item
    Workflow
    Gut Microbiome Analysis of IBD Patients (16S)
    Life sciences Bioinformatics Metagenomics
    +4
    This workflow investigates the composition of gut microbial communities from individuals with inflammatory bowl disease (IBD). Sa…
    knime > Life Sciences > Bioinformatics > Microbiome_Analysis
    2
  3. Go to item
    Workflow
    Tagging Genes in Disease Related Publications
    Life Sciences Ontologies RDF
    +4
    This example workflow shows how ontology terms can be used to tag biomedical literature. In the first step, the Triple File Reade…
    knime > Life Sciences > Text_Processing > Document_Tagging_Using_Ontology_Terms
    2
  4. Go to item
    Workflow
    Tagging Genes in Disease Related Publications
    Life Sciences Ontologies RDF
    +4
    This example workflow shows how ontology terms can be used to tag biomedical literature. In the first step, the Triple File Reade…
    knime > Digital Healthcare > Tag Genes in Disease related Literature
    1
  5. Go to item
    Workflow
    01_Chemistry_basics
    Chemistry Interactive View Life Sciences
    +1
    This workflow demonstrates basic cheminformatics functionality within KNIME Analytics Platform: Reading and writing various chemi…
    knime > Life Sciences > Events > 2021_09_13_Vienna_Summer_School > Beginners > exercises > 01_Interactive_visualization
    1
  6. Go to item
    Workflow
    Reactions with RDKit
    Life Sciences Cheminformatics Computational Chemistry
    +1
    This workflow demonstrates the one and two component reaction nodes from the RDKit community extension. This worklfow demonstrate…
    knime > Life Sciences > Cheminformatics > Reactions with RDKit > Reactions_with_RDKit_Hub_MarvinSketch
    1
  7. Go to item
    Workflow
    Convert a string to SMILES
    Cheminformatics Data Conversion Molecule
    +1
    This workflow demonstrates the use of the Molecule Type Cast node to convert a string to the SMILES data format. In a second step…
    knime > Workflow Snippets > Convert a string to SMILES
    1
  8. Go to item
    Workflow
    Search for Ethnicity Related Adverse Events of a Drug
    Adverse Events Life Sciences Ontologies
    This workflow allows a user to search literature to analyze relationships between adverse drug event of a certain drug and ethnic…
    knime > Digital Healthcare > Literature Search on Ethnicity related Adverse Events
    1
  9. Go to item
    Workflow
    Create hyperlinks in Table View
    Life Sciences Data Visualization Weblink
    +1
    This short workflow shows how to create hyperlinks based on pubmed ID's that allow the user to open PubMed directly from the Tabl…
    knime > Workflow Snippets > Create hyperlinks in Table View
    1
  10. Go to item
    Workflow
    Fetch Data from Database
    Life Sciences Database SQLite
    This example workflow shows how to retrieve data from SQLite database. Specifically, it shows how to select columns from a table …
    knime > Workflow Snippets > Fetch_Data_from_Database
    1
  11. Go to item
    Workflow
    Matched Molecular Pair analysis
    Life Sciences Cheminformatics Matched Molecular Pairs
    +1
    This workflow demonstrates how to to matched molecular pair analysis in KNIME and proposes a way how to deal with biological assa…
    knime > Life Sciences > Cheminformatics > Matched Molecular Pairs Analysis
    1
  12. Go to item
    Workflow
    Add Colors to Table Cells
    Data Visualization Flow variable Colors
    +1
    This workflow snippet shows a possible way to append colors to individual cells depending on the value. We configure the Rule Eng…
    knime > Workflow Snippets > Add Colors to Table Cells
    1
  13. Go to item
    Workflow
    Simple R View
    R plot Life Sciences Dose Response
    This workflow snippet illustrates how to create a simple R plot in the R View node. We use the R library drc to create a dose res…
    knime > Workflow Snippets > Simple R View
    1
  14. Go to item
    Workflow
    Gene Expression Analysis
    Life Sciences Bioinformatics R
    +2
    In this workflow, we analyze RNA-Seq data from tumors and matched normal tissue from three patients with oral squamous cell carci…
    knime > Examples > 08_Other_Analytics_Types > 02_Chemistry_and_Life_Sciences > 07_Gene_Expression_Analysis
    1
  15. Go to item
    Workflow
    Reproducible Variant Prioritization
    Bioinformatics Life Sciences Genetic Variation
    Finding disease-causal variants among large amounts of present variants remains a major challenge in next-generation sequencing e…
    knime > Life Sciences > Bioinformatics > Variant_Prioritization
    1
  16. Go to item
    Workflow
    Disease Genes
    Biology Disease Genes
    +10
    This workflow highlights the functionality of KNIME for exploring, analyzing, and visualizing life science data related to diseas…
    knime > Examples > 03_Visualization > 02_JavaScript > 10_Disease_Genes
    1
  17. Go to item
    Workflow
    GET Request Example (Life Sciences)
    REST Genes Life Sciences
    In this workflow snippet, we will use the REST service provided by MyGene.info [1,2] (https://mygene.info/) to obtain a list of h…
    knime > Workflow Snippets > GET Request
    1
  18. Go to item
    Workflow
    Generating chemical fingerprints
    Cheminformatics Fingerprints Life Sciences
    This short workflow demonstrates how to generate chemical fingerpints using different methods. It uses nodes from the RDKit and t…
    knime > Workflow Snippets > Generating chemical fingerprints
    1
  19. Go to item
    Workflow
    01_Chemistry_basics
    Chemistry Interactive View Life Sciences
    +1
    This workflow demonstrates basic cheminformatics functionality within KNIME Analytics Platform: Reading and writing various chemi…
    knime > Education > Courses > L4-CH Introduction to Working with Chemical Data > exercises > 01_Chemistry_basics
    1
  20. Go to item
    Workflow
    3D View of PDB structures
    PDB Cheminformatics 3D
    +1
    This workflow snippet demonstrates how to query PDB using the PDB nodes from the Vernalis extension and to visualized the results…
    knime > Workflow Snippets > 3D View of PDB structures
    1

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