Hub
Pricing About
  • Software
  • Blog
  • Forum
  • Events
  • Documentation
  • About KNIME
  • KNIME Community Hub
  • Search

57 results

Filter
LiveDesign
Schrodinger
LigPrep Glide AutoQSAR MacroModel QikProp Shape screening Molecular Dynamics Epik
  1. Go to item
    Workflow
    Torsion_profiles
    Schrodinger MacroModel LigPrep
    +1
    Performes a torsion scan for a defined dihedral using MacroModel and returns the energy profile. 22.2.4
    schroedinger > LiveDesign_models > Plotting > Torsion profiles
    0
    schroedinger
  2. Go to item
    Workflow
    AutoQSAR
    LiveDesign Schrodinger AutoQSAR
    It reports predictions from an AutoQSAR model. 22.0.0
    schroedinger > Internal development > 22-3 > DeepAutoQSAR > DeepAutoQSAR - sdf
    0
    schroedinger
  3. Go to item
    Workflow
    Ligand alignment MD refinement
    Molecular Dynamics Schrodinger LiveDesign
    Runs a molecular dynamics refinement on docking poses and generates event analysis reports.
    schroedinger > Internal development > 22-4 > Docking pose MD refinement and event analysis - 02 image output
    0
    schroedinger
  4. Go to item
    Workflow
    Docking and ligand strain
    LiveDesign Glide LigPrep
    +2
    Docks the compounds with Glide. The docking pose are minimized to a local minimum and a conformational search is run to find the …
    schroedinger > Internal development > 23-1 > Docking with core constraint
    0
    schroedinger
  5. Go to item
    Workflow
    Ligand alignment MD refinement
    Molecular Dynamics Schrodinger LiveDesign
    Runs a molecular dynamics refinement on docking poses and generates an event analysis reports.
    schroedinger > Internal development > 22-4 > Docking pose MD refinement and event analysis
    0
    schroedinger
  6. Go to item
    Workflow
    Ligand CNS desirability range plot
    LiveDesign LigPrep Schrodinger
    Generates radar plots of the CNS desirability MPO properties calculated on the LiveReport compound structures and the number of r…
    schroedinger > LiveDesign_models > Plotting > Ligand CNS desirability range plot
    0
    schroedinger
  7. Go to item
    Workflow
    AutoQSAR
    LiveDesign Schrodinger AutoQSAR
    It reports predictions from a DeepAutoQSAR model. 22.3.0
    schroedinger > Public > Recent_requests > DeepAutoQSAR prediction
    0
    schroedinger
  8. Go to item
    Workflow
    AutoQSAR
    LiveDesign Schrodinger AutoQSAR
    It reports predictions from an AutoQSAR model. 22.0.0
    schroedinger > Internal development > 22-3 > DeepAutoQSAR > DeepAutoQSAR
    0
    schroedinger
  9. Go to item
    Workflow
    AutoQSAR
    LiveDesign Schrodinger AutoQSAR
    It reports predictions from an AutoQSAR model. 22.0.0
    schroedinger > LiveDesign_models > Cheminformatics > AutoQSAR
    0
    schroedinger
  10. Go to item
    Workflow
    Biased diversity selection
    Schrodinger LiveDesign
    The score erosion algorithm is used to select a subset of compounds that have the highest value in the selected column and are as…
    schroedinger > LiveDesign_models > Cheminformatics > Biased diversity selection
    0
    schroedinger
  11. Go to item
    Workflow
    ADME
    LiveDesign QikProp LigPrep
    +1
    Calculates ADME properties with QikProp. [32100] 21.2.0 See more details on https://kni.me/w/RpztARBF0SQ3TAbw
    schroedinger > Internal development > 22-3 > atom_charge_labels > NDDO charges --- 0523 JK
    0
    schroedinger
  12. Go to item
    Workflow
    MM charges
    LiveDesign LigPrep Schrodinger
    Returns 3D structure with labels of partial charges on heavy atoms and polar hydrogen. Force field (MM) charges are applied. 22.2…
    schroedinger > Internal development > 22-3 > atom_charge_labels > MM charges --- 0525 JK
    0
    schroedinger
  13. Go to item
    Workflow
    ADME
    LiveDesign QikProp LigPrep
    +1
    Calculates ADME properties with QikProp. [32100] 21.2.0 See more details on https://kni.me/w/RpztARBF0SQ3TAbw
    schroedinger > Internal development > 22-3 > atom_charge_labels > MM charges --- 0523 JK
    0
    schroedinger
  14. Go to item
    Workflow
    NDDO charges
    LiveDesign LigPrep Schrodinger
    Returns 3D structure with labels of partial charges on heavy atoms and polar hydrogen. Semiempirical (NDDO) charges are applied. …
    schroedinger > Internal development > 22-3 > atom_charge_labels > NDDO charges --- 0525 JK
    0
    schroedinger
  15. Go to item
    Workflow
    LiveDesign import and export
    LiveDesign Schrodinger
    Structures and properties are retrieved from LiveDesign. New properties are added to an existing LiveReport including a column co…
    schroedinger > LiveDesign_models > _Import_and_export_to_LiveDesign > LD import and export
    0
    schroedinger
  16. Go to item
    Workflow
    Ligand alignment by shape with a flexible reference
    LiveDesign Shape screening LigPrep
    +1
    Aligns ligands on a reference structure treated flexibly as well, using Shape screening. [32102] 22.2.4
    schroedinger > LiveDesign_models > Structure alignment > Ligand alignment by shape with a flexible reference
    0
    schroedinger
  17. Go to item
    Workflow
    Ligand alignment with a cocrystallized reference
    LiveDesign LigPrep Schrodinger
    It aligns the structures on a reference ligand kept rigid using align_ligands utility. [32358] 22.2.4
    schroedinger > LiveDesign_models > Structure alignment > Ligand alignment with a cocrystallized reference
    0
    schroedinger
  18. Go to item
    Workflow
    AutoQSAR
    LiveDesign Schrodinger AutoQSAR
    Report prediction from an AutoQSAR model. 22.0.0
    schroedinger > Public > Recent_requests > AutoQSAR
    0
    schroedinger
  19. Go to item
    Workflow
    Cocrystallized ligands
    LiveDesign Protein preparation Schrodinger
    It prepares the structures and extracts the ligands. version 22.2.0
    schroedinger > LiveDesign_models > Protein preparation and refinement > Cocrystallized ligands
    0
    schroedinger
  20. Go to item
    Workflow
    Protonation forms
    LiveDesign LigPrep Epik
    +1
    Generates protonation forms with Epik and adds a new column with the structure of the most probable form. [32679] 21.2.0
    schroedinger > Internal development > 23-1 > Protonation forms2
    0
    schroedinger

KNIME
Open for Innovation

KNIME AG
Talacker 50
8001 Zurich, Switzerland
  • Software
  • Getting started
  • Documentation
  • E-Learning course
  • Solutions
  • KNIME Hub
  • KNIME Forum
  • Blog
  • Events
  • Partner
  • Developers
  • KNIME Home
  • KNIME Open Source Story
  • Careers
  • Contact us
Download KNIME Analytics Platform Read more on KNIME Business Hub
© 2023 KNIME AG. All rights reserved.
  • Trademarks
  • Imprint
  • Privacy
  • Terms & Conditions
  • Credits