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OpenMS
Mass spectrometry Introduction Visualization Database search Mass-spectrometry
+13
  1. Node / Manipulator
    AccurateMassSearch
    Community Nodes OpenMS Utilities
    Match MS signals to molecules from a database by mass. Web Documentation for AccurateMassSearch
    1
  2. Workflow
    Liquid chromatography-coupled mass-spectrometry introduction
    Mass spectrometry OpenMS Visualization
    +1
    Load mass spectra, process (e.g. filter) them "in-file", then convert them to tables, and visualize them.
    openms-team > Blog workflows > LCMS Introduction
    0
  3. Workflow
    Liquid chromatography-coupled mass-spectrometry introduction
    Mass spectrometry OpenMS Visualization
    +1
    Load mass spectra, process (e.g. filter) them "in-file", then convert them to tables, and visualize them.
    jpfeuffer > Share > LCMS Introduction
    0
  4. Workflow
    Liquid chromatography-coupled mass-spectrometry introduction
    Mass spectrometry OpenMS Visualization
    +1
    Load mass spectra as tables, filter them and visualize them in different ways.
    jpfeuffer > Share > Mass-spec. Bokeh Server
    0
  5. Workflow
    Peptide identification from mass-spectrometry data
    Mass-spectrometry OpenMS Peptide identification
    +1
    This workflow performs a simple peptide identification from mass-spectrometry experiments (in mzML format). It matches fragment s…
    openms-team > Blog workflows > Peptide-spectrum matching
    0
  6. Workflow
    Quantification of protein levels from mass-spectrometry experiments
    Mass-spectrometry OpenMS Proteomics
    +1
    This workflow performs a quantification of proteins from (label-free) mass-spectrometry data. The final results are relative comp…
    openms-team > Blog workflows > Protein label-free quantification
    0
  7. Workflow
    Untargeted Metabolomics through accurate mass search in MS data
    Metabolomics OpenMS Mass spectrometry
    This workflow performs a simple untargeted identification and quantification of metabolites from liquid chromatography mass spect…
    openms-team > Blog workflows > Metabolomics (Accurate Mass Search only)
    0
  8. Workflow
    Peptide identification from mass-spectra
    Mass spectrometry OpenMS Peptide identification
    +3
    Identify peptides by matching mass-spectra to a candidate protein database. It supports a combination of multiple search engines …
    openms-team > Blog workflows > Peptide Identification from MS
    0
  9. Node / Manipulator
    AssayGeneratorMetabo
    Community Nodes OpenMS Utilities
    Assay library generation from DDA data (Metabolomics) Web Documentation for AssayGeneratorMetabo
    0
  10. Node / Manipulator
    BaselineFilter
    Community Nodes OpenMS Signal processing and preprocessing
    Removes the baseline from profile spectra using a top-hat filter. Web Documentation for BaselineFilter
    0
  11. Node / Manipulator
    CVInspector
    Community Nodes OpenMS Utilities
    A tool for visualization and validation of PSI mapping and CV files. Web Documentation for CVInspector
    0
  12. Node / Manipulator
    ClusterMassTraces
    Community Nodes OpenMS Utilities
    Creates pseudo spectra. Web Documentation for ClusterMassTraces
    0
  13. Node / Manipulator
    ClusterMassTracesByPrecursor
    Community Nodes OpenMS Utilities
    Correlate precursor masstraces with fragment ion masstraces in SWATH maps based on their elution profile. Web Documentation for C…
    0
  14. Node / Manipulator
    CometAdapter
    Community Nodes OpenMS Identification
    Annotates MS/MS spectra using Comet. Web Documentation for CometAdapter
    0
  15. Node / Manipulator
    CompNovo
    Community Nodes OpenMS Identification
    Performs a de novo peptide identification using the CompNovo engine. Web Documentation for CompNovo
    0
  16. Node / Manipulator
    CompNovoCID
    Community Nodes OpenMS Identification
    Performs a de novo peptide identification using the CompNovo engine. Web Documentation for CompNovoCID
    0
  17. Node / Manipulator
    ConsensusID
    Community Nodes OpenMS ID Processing
    Computes a consensus of peptide identifications of several identification engines. Web Documentation for ConsensusID
    0
  18. Node / Manipulator
    ConsensusMapNormalizer
    Community Nodes OpenMS Map Alignment
    Normalizes maps of one consensusXML file Web Documentation for ConsensusMapNormalizer
    0
  19. Node / Manipulator
    ConsensusTextReader
    Community Nodes OpenMS Conversion
    This node can be used to read the output of the TextExporter tool into a KNIME table. The TextExporter, when applied to a consens…
    0
  20. Node / Manipulator
    CruxAdapter
    Community Nodes OpenMS Identification
    Identifies MS/MS spectra using Crux. Web Documentation for CruxAdapter
    0