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Peptide identification
OpenMS Mass spectrometry Protein identification Protein quantification Database search FDR MSstats
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    Workflow
    Peptide identification from mass-spectrometry data
    Mass-spectrometry OpenMS Peptide identification
    +1
    This workflow performs a simple peptide identification from mass-spectrometry experiments (in mzML format). It matches fragment s…
    openms-team > Blog workflows > Peptide-spectrum matching
    0
    openms-team
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    Workflow
    Proteomics_LFQ
    OpenMS Mass spectrometry Peptide identification
    +2
    Combines peptide identifications from X!Tandem and Comet. Uses normalized feature intensities for peptide quantification. No smar…
    openms-team > OpenMS Tutorial Workflows > Proteomics_LFQ
    0
    openms-team
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    Workflow
    basic_peptide_identification_with_inference
    OpenMS Mass spectrometry Peptide identification
    +4
    This workflow performs a basic peptide identification search, infers proteins and computes abundances using spectral counting. Th…
    openms-team > OpenMS Tutorial Workflows > basic_peptide_identification_with_inference
    0
    openms-team
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    Workflow
    openmsLFQ_iPRG2015
    OpenMS Mass spectrometry Peptide identification
    +1
    Simple workflow for peptide identification and quantification. No smart protein inference is done and all possible proteins are r…
    openms-team > OpenMS Tutorial Workflows > openmsLFQ_iPRG2015
    0
    openms-team
  5. Go to item
    Workflow
    basic_peptide_identification
    OpenMS Mass spectrometry Peptide identification
    +1
    This workflow performs a basic peptide identification search. The mzML files are searched with X!Tandem against a protein databas…
    openms-team > OpenMS Tutorial Workflows > basic_peptide_identification
    0
    openms-team
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    Workflow
    labelfree_with_protein_quantification
    OpenMS Mass spectrometry Peptide identification
    +2
    Identification with X!Tandem in the ID meta node, Protein Inference with Fido and protein quantification based on feature intensi…
    openms-team > OpenMS Tutorial Workflows > labelfree_with_protein_quantification
    0
    openms-team
  7. Go to item
    Workflow
    Peptide identification from mass-spectra
    Mass spectrometry OpenMS Peptide identification
    +3
    Identify peptides by matching mass-spectra to a candidate protein database. It supports a combination of multiple search engines …
    openms-team > Blog workflows > Peptide Identification from MS
    0
    openms-team
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    Workflow
    Phosphoproteomics_ID
    OpenMS Mass spectrometry Peptide identification
    +1
    Uses MSGFPlus and Percolator for peptide identification, Luciphor to identify phosphorylation sites on peptide sequences and then…
    openms-team > OpenMS Tutorial Workflows > Phosphoproteomics_ID.knwf
    0
    openms-team
  9. Go to item
    Workflow
    Identification_quantification_with_inference_isobaric
    OpenMS Mass spectrometry Peptide identification
    +3
    ## Description OpenMS exam workflow for the analysis of isobaric data (e.g. TMT). A) Quantification via the IsobaricAnalzyer B) S…
    openms-team > OpenMS Tutorial Workflows > Identification_quantification_with_inference_isobaric_epifany_MSstatsTMT
    0
    openms-team

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