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Speedy SMILES
Community Nodes Vernalis Filters Manipulations Properties
  1. Go to item
    Node / Manipulator
    Speedy SMILES Charge Count
    Community Nodes Vernalis Speedy SMILES
    +2
    This node returns the charge count(s) of a SMILES Cell. This node was developed by Vernalis Research . For feedback and more info…
    0
    vernalis
  2. Go to item
    Node / Manipulator
    Speedy SMILES Chiral Centre Count
    Community Nodes Vernalis Speedy SMILES
    +2
    This node returns the explicitly-defined chiral centre count of a SMILES Cell. This node was developed by Vernalis Research . For…
    0
    vernalis
  3. Go to item
    Node / Manipulator
    Speedy SMILES Clean '.' non-bonds
    Community Nodes Vernalis Speedy SMILES
    +2
    This node moves cleans leading and trailing '.' non-bond characters, and treating multiple contiguous '.' characters as a single …
    0
    vernalis
  4. Go to item
    Node / Manipulator
    Speedy SMILES Clean Bonds
    Community Nodes Vernalis Speedy SMILES
    +2
    This node cleans unecessary bonds: Single bonds - only retained then they are between two aromatic atoms Aromatic bonds - all rem…
    0
    vernalis
  5. Go to item
    Node / Manipulator
    Speedy SMILES Clean Charges
    Community Nodes Vernalis Speedy SMILES
    +2
    This node cleans the deprecated charge style using multiple repeated '+' or '-' characters, e.g. [Fe+++] becomes [Fe+3], [O--] be…
    0
    vernalis
  6. Go to item
    Node / Manipulator
    Speedy SMILES Clean Isotope Labels
    Community Nodes Vernalis Speedy SMILES
    +2
    This node moves cleans leading zeros from isotope labels. As [0Aa] is not the same as [Aa] (where Aa is any element), if only zer…
    0
    vernalis
  7. Go to item
    Node / Manipulator
    Speedy SMILES Component Count
    Community Nodes Vernalis Speedy SMILES
    +2
    This node returns the ring count of a SMILES Cell. This node was developed by Vernalis Research . For feedback and more informati…
    0
    vernalis
  8. Go to item
    Node / Manipulator
    Speedy SMILES Convert D / T Pseudoatoms to Hydrogen Isotopes
    Community Nodes Vernalis Speedy SMILES
    +2
    This node moves converts the D and T pseudoatoms to 2H and 3H isotopes This node was developed by Vernalis Research . For feedbac…
    0
    vernalis
  9. Go to item
    Node / Manipulator
    Speedy SMILES Convert Hydrogen Isotopes to D / T Pseudoatoms
    Community Nodes Vernalis Speedy SMILES
    +2
    This node moves converts 2H and 3H isotopes to the D and T pseudoatoms This node was developed by Vernalis Research . For feedbac…
    0
    vernalis
  10. Go to item
    Node / Manipulator
    Speedy SMILES Convert to Scaffold
    Community Nodes Vernalis Speedy SMILES
    +2
    This node converts SMILES strings to a scaffold representation. By default, all atoms are represented as 'C' (i.e. carbon), and t…
    0
    vernalis
  11. Go to item
    Node / Manipulator
    Speedy SMILES Cyclise End Atoms
    Community Nodes Vernalis Speedy SMILES
    +2
    This node cyclises a SMILES string by connecting the first and last atom with a new single bond by inserting a ring closure NB No…
    0
    vernalis
  12. Go to item
    Node / Manipulator
    Speedy SMILES De-salt
    Community Nodes Vernalis Speedy SMILES
    +2
    This node desalts SMILES strings by splitting into their individual components and counting the number of heavy atoms in each com…
    0
    vernalis
  13. Go to item
    Node / Manipulator
    Speedy SMILES Dummy Atom Atom Class to Isotope Label
    Community Nodes Vernalis Speedy SMILES
    +2
    This node moves dummy atom atom classes to isotopes. Where an isotope is already present, or an (illegal!) non-numeric atom class…
    0
    vernalis
  14. Go to item
    Node / Manipulator
    Speedy SMILES Dummy Atom Count
    Community Nodes Vernalis Speedy SMILES
    +2
    This node returns the dummy atom count (i.e. '*', '[*]', '[3*]' etc) of a SMILES Cell. This node was developed by Vernalis Resear…
    0
    vernalis
  15. Go to item
    Node / Manipulator
    Speedy SMILES Dummy Atom Isotope to Atom Class Label
    Community Nodes Vernalis Speedy SMILES
    +2
    This node moves dummy atom isotope labels to atom classes. Where an atom class is already present, the atom is left unchanged. e.…
    0
    vernalis
  16. Go to item
    Node / Manipulator
    Speedy SMILES Element Count (C, N, O)
    Community Nodes Vernalis Speedy SMILES
    +2
    This node returns the C, N and/or O count(s) of a SMILES Cell. This node was developed by Vernalis Research . For feedback and mo…
    0
    vernalis
  17. Go to item
    Node / Manipulator
    Speedy SMILES Enumerate Stereoisomers
    Community Nodes Vernalis Speedy SMILES
    +2
    This node enumerates all possible options of all explicitly defined stereocentres. Where '@' or '@@' has been used as shorthand f…
    0
    vernalis
  18. Go to item
    Node / Manipulator
    Speedy SMILES Explicit Chirality Filter
    Community Nodes Vernalis Speedy SMILES
    +2
    This node removes rows which do not contain explicit chiral centres This node was developed by Vernalis Research . For feedback a…
    0
    vernalis
  19. Go to item
    Node / Manipulator
    Speedy SMILES Explicit Chirality Splitter
    Community Nodes Vernalis Speedy SMILES
    +2
    This node removes rows which do not contain explicit chiral centres This node was developed by Vernalis Research . For feedback a…
    0
    vernalis
  20. Go to item
    Node / Manipulator
    Speedy SMILES Explicit Double Bond Geometry Filter
    Community Nodes Vernalis Speedy SMILES
    +2
    This node removes rows which do not contain double bonds with explicit geometry This node was developed by Vernalis Research . Fo…
    0
    vernalis

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