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OpenMS
Mass spectrometry Introduction Visualization Database search Mass-spectrometry Peptide identification Proteomics FDR Metabolomics
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    Workflow
    Peptide identification from mass-spectra
    Mass spectrometry OpenMS Peptide identification
    +3
    Identify peptides by matching mass-spectra to a candidate protein database. It supports a combination of multiple search engines …
    openms-team > Blog workflows > Peptide Identification from MS
    0
    openms-team
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    Workflow
    Liquid chromatography-coupled mass-spectrometry introduction
    Mass spectrometry OpenMS Visualization
    +1
    Load mass spectra, process (e.g. filter) them "in-file", then convert them to tables, and visualize them.
    openms-team > Blog workflows > LCMS Introduction
    0
    openms-team
  3. Go to item
    Workflow
    Liquid chromatography-coupled mass-spectrometry introduction
    Mass spectrometry OpenMS Visualization
    +1
    Updated version for KNIME 4.7 and OpenMS 3.0 (nightly). Load mass spectra as tables, filter them and visualize them in different …
    jpfeuffer > Share > Massspec_Bokeh_Server
    0
    jpfeuffer
  4. Go to item
    Workflow
    Liquid chromatography-coupled mass-spectrometry introduction
    Mass spectrometry OpenMS Visualization
    +1
    Load mass spectra as tables, filter them and visualize them in different ways.
    jpfeuffer > Share > Mass-spec. Bokeh Server
    0
    jpfeuffer
  5. Go to item
    Workflow
    Liquid chromatography-coupled mass-spectrometry introduction
    Mass spectrometry OpenMS Visualization
    +1
    Load mass spectra, process (e.g. filter) them "in-file", then convert them to tables, and visualize them.
    jpfeuffer > Share > LCMS Introduction
    0
    jpfeuffer
  6. Go to item
    Workflow
    Liquid chromatography-coupled mass-spectrometry introduction
    Mass spectrometry OpenMS Visualization
    +1
    Load mass spectra, process (e.g. filter) them "in-file", then convert them to tables, and visualize them.
    pe_bodet > Public > LCMS Introduction
    0
    pe_bodet
  7. Go to item
    Workflow
    Quantification of protein levels from mass-spectrometry experiments
    Mass-spectrometry OpenMS Proteomics
    +1
    This workflow performs a quantification of proteins from (label-free) mass-spectrometry data. The final results are relative comp…
    openms-team > Blog workflows > Protein label-free quantification
    0
    openms-team
  8. Go to item
    Workflow
    Untargeted Metabolomics through accurate mass search in MS data
    Metabolomics OpenMS Mass spectrometry
    This workflow performs a simple untargeted identification and quantification of metabolites from liquid chromatography mass spect…
    openms-team > Blog workflows > Metabolomics (Accurate Mass Search only)
    0
    openms-team
  9. Go to item
    Workflow
    Peptide identification from mass-spectrometry data
    Mass-spectrometry OpenMS Peptide identification
    +1
    This workflow performs a simple peptide identification from mass-spectrometry experiments (in mzML format). It matches fragment s…
    openms-team > Blog workflows > Peptide-spectrum matching
    0
    openms-team

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