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20 results

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Canvas
Cheminformatics Real World Database Desalt Descriptors Filtering Preparation Binding Site Volume Clustering
  1. Go to item
    Workflow
    Similarity Search
    Cheminformatics Canvas
    Find the most similar compounds to a sketched molecule in a database. Screen the same database against several query structures. …
    schroedinger > Workflow_examples > Cheminformatics > Similarity > Similarity 1-2
    1
    schroedinger
  2. Go to item
    Workflow
    Vendor database preparation
    Real World Canvas Database
    +4
    Label compounds from a single vendor. Prepare and filter compounds by various criteria.
    schroedinger > Workflow_examples > Real world > Database preparation > Database preparation 1-3
    1
    schroedinger
  3. Go to item
    Workflow
    Maximum Common Substructure Search (MCS)
    Cheminformatics Canvas
    Create all possible MCS groups and list the groups identified. Inspect the compounds in the first group and list the compounds th…
    schroedinger > Workflow_examples > Cheminformatics > MCSS > MCSS 1-3
    0
    schroedinger
  4. Go to item
    Workflow
    Maximum Common Substructure Search (MCS)
    Cheminformatics Canvas
    Maximum Common Substructure Search (MCS): Create all possible MCS groups and list the groups identified. Inspect the compounds in…
    schroedinger > Workflow_examples > Cheminformatics > MCSS > MCSS 1-4
    0
    schroedinger
  5. Go to item
    Workflow
    Substructure Search
    Cheminformatics Canvas
    Search a set of structures against a sketched query molecule or SMARTS patterns. Report the compounds that don't pass all the REO…
    schroedinger > Workflow_examples > Cheminformatics > Substructure > Substructure 1
    0
    schroedinger
  6. Go to item
    Workflow
    Vendor database preparation
    Real World Canvas Database
    +4
    Label compounds from a single vendor. Prepare and filter compounds by various criteria.
    schroedinger > Workflow_examples > Real world > Database preparation > Database preparation 1-2
    0
    schroedinger
  7. Go to item
    Workflow
    Vendor database preparation
    Real World Canvas Database
    +4
    Label compounds from a single vendor. Prepare and filter compounds by various criteria.
    schroedinger > Workflow_examples > Real world > Database preparation > Database preparation 1
    0
    schroedinger
  8. Go to item
    Workflow
    Ensure Molecule Title Uniqueness
    General Maestro Canvas
    Ensure unique molecule titles (using the KNIME RowID or the Schrödinger dedicated node). This is useful in the context of Canvas.…
    schroedinger > Workflow_examples > General > Unique molecule titles > Unique molecule titles
    0
    schroedinger
  9. Go to item
    Workflow
    Binding site shape clustering
    Real World SiteMap Canvas
    +5
    Analyze a set of PDB structures (or a molecular dynamics trajectory) with SiteMap to characterize frames for possible binding sit…
    schroedinger > Workflow_examples > Real world > Binding site shape clustering > Binding site shape clustering
    0
    schroedinger
  10. Go to item
    Workflow
    Database Analysis
    Cheminformatics Canvas
    Assess the coverage of a database from the distribution of the distance to the nearest neighbor of each molecule in the database.…
    schroedinger > Workflow_examples > Cheminformatics > Database analysis > Database analysis 1
    0
    schroedinger
  11. Go to item
    Workflow
    Database Analysis
    Cheminformatics Canvas
    Assess the coverage of a database from the distribution of the distance to the nearest neighbor of each molecule in the database.…
    schroedinger > Workflow_examples > Cheminformatics > Database analysis > Database analysis 1-2
    0
    schroedinger
  12. Go to item
    Workflow
    Cluster by Fingerprint
    Cheminformatics Canvas
    Cluster structures by fingerprints and inspect the clustering statistics to choose a good number of clusters. Create automaticall…
    schroedinger > Workflow_examples > Cheminformatics > Clustering > Clustering 1-2
    0
    schroedinger
  13. Go to item
    Workflow
    Cluster by Fingerprint
    Cheminformatics Canvas
    Cluster structures by fingerprints and inspect the clustering statistics to choose a good number of clusters. Create automaticall…
    schroedinger > Workflow_examples > Cheminformatics > Clustering > Clustering 1-4
    0
    schroedinger
  14. Go to item
    Workflow
    Cluster by Fingerprint
    Cheminformatics Canvas
    Cluster structures by fingerprints and inspect the clustering statistics to choose a good number of clusters. Create automaticall…
    schroedinger > Workflow_examples > Cheminformatics > Clustering > Clustering 1-3
    0
    schroedinger
  15. Go to item
    Workflow
    Maximum Common Substructure Search (MCS)
    Cheminformatics Canvas
    Create all possible MCS groups and list the groups identified. Inspect the compounds in the first group and list the compounds th…
    schroedinger > Workflow_examples > Cheminformatics > MCSS > MCSS 1-2
    0
    schroedinger
  16. Go to item
    Workflow
    Maximum Common Substructure Search (MCS)
    Cheminformatics Canvas
    Create all possible MCS groups and list the groups identified. Inspect the compounds in the first group and list the compounds th…
    schroedinger > Workflow_examples > Cheminformatics > MCSS > MCSS 1
    0
    schroedinger
  17. Go to item
    Workflow
    Select Diverse Molecules
    Cheminformatics Canvas
    Pick diverse molecules from a library and inspect the structures. [Requires: Canvas]
    schroedinger > Workflow_examples > Cheminformatics > Diversity > Diversity
    0
    schroedinger
  18. Go to item
    Workflow
    Substructure Search
    Cheminformatics Canvas
    Search a set of structures against a sketched query molecule or SMARTS patterns. Report the compounds that don't pass all the REO…
    schroedinger > Workflow_examples > Cheminformatics > Substructure > Substructure 1-2
    0
    schroedinger
  19. Go to item
    Workflow
    Similarity Search
    Cheminformatics Canvas
    Find the most similar compounds to a sketched molecule in a database. Screen the same database against several query structures. …
    schroedinger > Workflow_examples > Cheminformatics > Similarity > Similarity 1
    0
    schroedinger
  20. Go to item
    Workflow
    Cluster by Fingerprint
    Cheminformatics Canvas
    Cluster structures by fingerprints and inspect the clustering statistics to choose a good number of clusters. Create automaticall…
    schroedinger > Workflow_examples > Cheminformatics > Clustering > Clustering 1
    0
    schroedinger

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