Match MS signals to molecules from a database by mass. Web Documentation for AccurateMassSearch

Assay library generation from DDA data (Metabolomics) Web Documentation for AssayGeneratorMetabo

Removes the baseline from profile spectra using a top-hat filter. Web Documentation for BaselineFilter

A tool for visualization and validation of PSI mapping and CV files. Web Documentation for CVInspector

Creates pseudo spectra. Web Documentation for ClusterMassTraces

Correlate precursor masstraces with fragment ion masstraces in SWATH maps based on their elution profile. Web Documentation for C…

Annotates MS/MS spectra using Comet. Web Documentation for CometAdapter

Performs a de novo peptide identification using the CompNovo engine. Web Documentation for CompNovo

Performs a de novo peptide identification using the CompNovo engine. Web Documentation for CompNovoCID

Computes a consensus of peptide identifications of several identification engines. Web Documentation for ConsensusID

Normalizes maps of one consensusXML file Web Documentation for ConsensusMapNormalizer

This node can be used to read the output of the TextExporter tool into a KNIME table. The TextExporter, when applied to a consens…

Identifies MS/MS spectra using Crux. Web Documentation for CruxAdapter

Extracts spectra of an MS run file to several files in DTA format. Web Documentation for DTAExtractor

Filters a protein database (FASTA format) based on identified proteins Web Documentation for DatabaseFilter

Computes a suitability score for a database which was used for a peptide identification search. Also reports the quality of LC-MS…

Orders the spectra of MALDI spotting plates correctly. Web Documentation for DeMeanderize

Decharges and merges different feature charge variants of the same peptide. Web Documentation for Decharger

Create decoy sequence database from forward sequence database. Web Documentation for DecoyDatabase

Digests a protein database in-silico. Web Documentation for Digestor