Match MS signals to molecules from a database by mass. Web Documentation for AccurateMassSearch

Assay library generation from DDA data (Metabolomics) Web Documentation for AssayGeneratorMetabo

A tool for visualization and validation of PSI mapping and CV files. Web Documentation for CVInspector

Creates pseudo spectra. Web Documentation for ClusterMassTraces

Correlate precursor masstraces with fragment ion masstraces in SWATH maps based on their elution profile. Web Documentation for C…

Filters a protein database (FASTA format) based on identified proteins Web Documentation for DatabaseFilter

Orders the spectra of MALDI spotting plates correctly. Web Documentation for DeMeanderize

Create decoy sequence database from forward sequence database. Web Documentation for DecoyDatabase

Digests a protein database in-silico. Web Documentation for Digestor

digests a protein database in-silico Web Documentation for DigestorMotif

Util which can be used to evaluate pair ratios on enhanced resolution (zoom) scans. Web Documentation for ERPairFinder

Runs a Bayesian protein inference. Web Documentation for Epifany

Evaluation tool for feature detection algorithms. Web Documentation for FFEval

Detects features in MS1 data based on metabolite identifications. Web Documentation for FeatureFinderMetaboIdent

Compares two files, tolerating numeric differences. Web Documentation for FuzzyDiff

Estimates peptide probabilities using a decoy search strategy. WARNING: This util is deprecated. Web Documentation for IDDecoyPro…

Extracts 'n' peptides randomly or best 'n' from idXML files. Web Documentation for IDExtractor

Calculates a distribution of the mass error from given mass spectra and IDs. Web Documentation for IDMassAccuracy

Switches between different scores of peptide or protein hits in identification data Web Documentation for IDScoreSwitcher

Splits protein/peptide identifications off of annotated data files Web Documentation for IDSplitter