Annotates MS/MS spectra using Comet. Web Documentation for CometAdapter

Performs a de novo peptide identification using the CompNovo engine. Web Documentation for CompNovo

Performs a de novo peptide identification using the CompNovo engine. Web Documentation for CompNovoCID

Identifies MS/MS spectra using Crux. Web Documentation for CruxAdapter

MS/MS database search using MS-GF+. Web Documentation for MSGFPlusAdapter

Annotates MS/MS spectra using Mascot. Web Documentation for MascotAdapterOnline

Annotates MS/MS spectra using MyriMatch. Web Documentation for MyriMatchAdapter

Annotates MS/MS spectra using OMSSA. Web Documentation for OMSSAAdapter

Tool for protein-protein cross-linking identification using labeled linkers. Web Documentation for OpenPepXL

Tool for protein-protein cross linking with label-free linkers. Web Documentation for OpenPepXLLF

Protein inference based on an aggregation of the scores of the identified peptides. Web Documentation for ProteinInference

Identifies peptide MS/MS spectra by spectral matching with a searchable spectral library. Web Documentation for SpecLibSearcher

Applies thresholdfilter to peak spectra. Web Documentation for SpectraFilterBernNorm

Applies thresholdfilter to peak spectra. Web Documentation for SpectraFilterMarkerMower

Applies thresholdfilter to peak spectra. Web Documentation for SpectraFilterNLargest

Normalizes intensity of peak spectra. Web Documentation for SpectraFilterNormalizer

Applies thresholdfilter to peak spectra. Web Documentation for SpectraFilterParentPeakMower

Applies thresholdfilter to peak spectra. Web Documentation for SpectraFilterScaler

Applies thresholdfilter to peak spectra. Web Documentation for SpectraFilterSqrtMower

Applies thresholdfilter to peak spectra. Web Documentation for SpectraFilterThresholdMower