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MSstats
OpenMS Protein quantification Mass Spectrometry Protein identification Peptide identification
  1. Workflow
    MSstatsTMT
    OpenMS Mass spectrometry MSstats
    +1
    Post processing workflow for MSstatsTMT. Requires output from MSstatsConverter output. As an example input, an intermediate resul…
    openms-team > Tutorial Workflows OpenMS 2.7 > MSstatsTMT
    1
    openms-team
  2. Workflow
    MSstats_statPostProcessing_iPRG2015
    OpenMS Mass Spectrometry MSstats
    +1
    Uses MSstatsConverter to make tables that are processed in short R code scripts in various nodes. A consensusXML file from an LFQ…
    openms-team > Tutorial Workflows OpenMS 2.7 > MSstats_statPostProcessing_iPRG2015.knwf
    0
    openms-team
  3. Workflow
    Identification_quantification_with_inference_isobaric_epifany_MSstatsTMT
    OpenMS Mass spectrometry Peptide identification
    +3
    ## Description OpenMS exam workflow for the analysis of isobaric data (e.g. TMT). A) Quantification via the IsobaricAnalzyer B) S…
    openms-team > Tutorial Workflows OpenMS 3.0 > Identification_quantification_with_inference_isobaric_epifany_MSstatsTMT
    0
    openms-team
  4. Workflow
    ProteomicsLFQ_tool_and_MSstats_postprocessing
    OpenMS Mass spectrometry Protein identification
    +2
    Uses the ProteomicsLFQ that contains the standard proteomics LFQ pipeline, after peptide and protein identification. Applies post…
    openms-team > Tutorial Workflows OpenMS 2.7 > ProteomicsLFQ_tool_and_MSstats_postprocessing
    0
    openms-team
  5. Workflow
    Identification_quantification_with_inference_isobaric
    OpenMS Mass spectrometry Peptide identification
    +3
    ## Description OpenMS exam workflow for the analysis of isobaric data (e.g. TMT). A) Quantification via the IsobaricAnalzyer B) S…
    openms-team > Tutorial Workflows OpenMS 2.7 > Identification_quantification_with_inference_isobaric_epifany_MSstatsTMT
    0
    openms-team
  6. Workflow
    MSstatsTMT
    OpenMS Mass spectrometry MSstats
    +1
    Post processing workflow for MSstatsTMT. Requires output from MSstatsConverter output. As an example input, an intermediate resul…
    openms-team > Tutorial Workflows OpenMS 3.0 > MSstatsTMT
    0
    openms-team
  7. Workflow
    MSstats_statPostProcessing_iPRG2015
    OpenMS Mass Spectrometry MSstats
    +1
    Uses MSstatsConverter to make tables that are processed in short R code scripts in various nodes. A consensusXML file from an LFQ…
    openms-team > Tutorial Workflows OpenMS 3.0 > MSstats_statPostProcessing_iPRG2015
    0
    openms-team