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Chemistry
Life Sciences Education Interactive View Bit Vector Distances Hierarchical Clustering
+12
  1. Go to item
    Workflow
    Structure standardisation for molecules
    Cheminformatics Standardisation Structure standardisation
    +1
    This workflow uses RDKit to standardise the input structures. The user can use SDF or SMILES structures and standardise them with…
    jenniferh > Public > Structure_standardisation_RDKit
    1
  2. Go to item
    Workflow
    01_Chemistry_basics
    Chemistry Interactive View Life Sciences
    +1
    This workflow demonstrates basic cheminformatics functionality within KNIME Analytics Platform: Reading and writing various chemi…
    knime > Education > Courses > L4-CH Introduction to Working with Chemical Data > exercises > 01_Chemistry_basics
    1
  3. Go to item
    Workflow
    01_Chemistry_basics
    Chemistry Interactive View Life Sciences
    +1
    This workflow demonstrates basic cheminformatics functionality within KNIME Analytics Platform: Reading and writing various chemi…
    knime > Life Sciences > Events > 2021_09_13_Vienna_Summer_School > Beginners > exercises > 01_Interactive_visualization
    1
  4. Go to item
    Node / Manipulator
    Molecule Type Cast
    Chemistry Translators Streamable
    Node that converts all cells of a chosen string column into several one of several molecule types, such as Mol2, PDB, SDF, CML, H…
    1
  5. Go to item
    Workflow
    04_SimilaritySearch
    Chemistry Shared Components Life Sciences
    +2
    In this exercise we expand our results by finding building blocks similar to those we selected in the previous exercise (03_Clust…
    knime > Education > Courses > L4-CH Introduction to Working with Chemical Data > solutions > 04_SimilaritySearch
    0
  6. Go to item
    Workflow
    03_Clustering
    Hierarchical Clustering Bit Vector Distances Molecule Descriptors
    +4
    This exercise shows how to perform hierarchical clustering using molecule fingerprints and create an interactive view to pick int…
    catherineoleary > Public > L4-CH Introduction to Working with Chemical Data > solutions > 03_Clustering
    0
  7. Go to item
    Workflow
    01_Chemistry_basics
    Chemistry Interactive View Life Sciences
    +1
    This workflow demonstrates basic cheminformatics functionality within KNIME Analytics platform: Reading and writing various chemi…
    catherineoleary > Public > L4-CH Introduction to Working with Chemical Data > solutions > 01_Chemistry_basics
    0
  8. Go to item
    Workflow
    04_SimilaritySearch
    Chemistry Shared Components Life Sciences
    +2
    In this exercise we expand our results by finding building blocks similar to those we selected in the previous exercise (03_Clust…
    catherineoleary > Public > L4-CH Introduction to Working with Chemical Data > solutions > 04_SimilaritySearch
    0
  9. Go to item
    Workflow
    Web Application for Bioactivity Prediction
    Web app Bioactivity prediction Life science
    +5
    This workflow creates a small web application for bioactivity prediction.The data can be uploaded as a CSV file containing canoni…
    janina > Public > 2022_01_KNIME_User_Day > Web Application for Bioactivity Prediction
    0
  10. Go to item
    Workflow
    03_Clustering
    Hierarchical Clustering Bit Vector Distances Molecule Descriptors
    +4
    This exercise shows how to perform hierarchical clustering using molecule fingerprints and create an interactive view to pick int…
    knime > Life Sciences > Events > 2021_09_13_Vienna_Summer_School > Advanced > solutions > 01_Clustering_Fingerprint_Similarity
    0
  11. Go to item
    Workflow
    04_SimilaritySearch
    Chemistry Shared Components Life Sciences
    +2
    In this exercise we expand our results by finding building blocks similar to those we selected in the previous exercise (03_Clust…
    knime > Life Sciences > Events > 2022_05_08_GCC > solution > Similarity_Search
    0
  12. Go to item
    Workflow
    03_Clustering
    Hierarchical Clustering Bit Vector Distances Molecule Descriptors
    +4
    This exercise shows how to perform hierarchical clustering using molecule fingerprints and create an interactive view to pick int…
    knime > Education > Courses > L4-CH Introduction to Working with Chemical Data > solutions > 03_Clustering
    0
  13. Go to item
    Workflow
    03_Clustering
    Hierarchical Clustering Bit Vector Distances Molecule Descriptors
    +3
    This exercise shows how to perform hierarchical clustering based on molecule fingerprints and create an interactive view to pick …
    greglandrum > Public > Presentations > 2020 > 11_02_GCC_Workshop > Clustering_and_RGD
    0
  14. Go to item
    Workflow
    03_Clustering
    Chemistry Hierarchical Clustering Bit Vector Distances
    +4
    This exercise shows how to perform hierarchical clustering using molecule fingerprints and create an interactive view to pick int…
    catherineoleary > Public > L4-CH Introduction to Working with Chemical Data > exercises > 03_Clustering
    0
  15. Go to item
    Workflow
    03_Clustering
    Chemistry Hierarchical Clustering Bit Vector Distances
    +4
    This exercise shows how to perform hierarchical clustering using molecule fingerprints and create an interactive view to pick int…
    knime > Life Sciences > Events > 2021_09_13_Vienna_Summer_School > Advanced > exercises > 01_Clustering_Fingerprint_Similarity
    0
  16. Go to item
    Workflow
    Substructure Search with MoSS
    Substructure Search MoSS Life Science
    +1
    This flow demonstrates the functionality of the MoSS node. It takes a a bunch of molecules (ideally grouped into a least two clas…
    ntxxt123 > Public > 01_Example_for_using_MoSS
    0
  17. Go to item
    Workflow
    01_Chemistry_basics
    Chemistry Interactive View Life Sciences
    +1
    This workflow demonstrates basic cheminformatics functionality within KNIME Analytics Platform: Reading and writing various chemi…
    urbanl > Public > 01_Chemistry_basics
    0
  18. Go to item
    Workflow
    Model Selection with Integrated Deployment
    Chemistry Naive bayes Random forest
    +11
    This workflow deploys an advanced parameter optimzation protocol with four machine learning methods. In this implementation the c…
    knime > Education > Courses > L4-CA Machine Learning for Chemical Applications > Exercises > 02_Hyperparameter Optimization
    0
  19. Go to item
    Workflow
    Model Selection with Integrated Deployment
    Chemistry Naive bayes Random forest
    +11
    This workflow deploys an advanced parameter optimzation protocol with four machine learning methods. In this implementation the c…
    knime > Education > Courses > L4-CA Machine Learning for Chemical Applications > Solutions > 02_Hyperparameter Optimization_Bonus
    0
  20. Go to item
    Workflow
    04_SimilaritySearch
    Chemistry Life Sciences Similarity Search
    +2
    In this exercise we expand our results by finding building blocks similar to those we selected in the previous exercise (03_Clust…
    knime > Life Sciences > Events > 2021_09_13_Vienna_Summer_School > Advanced > exercises > 02_SimilaritySearch
    0

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