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Life science
Education Life Sciences Chemistry Component Visualization Workflow control Cheminformatics Filter
  1. Go to item
    Workflow
    ML Prototyping for Bioactivity Data
    Cheminformatics Webportal Data Visualization
    +7
    This workflow demonstrates model building for a bioactivity data set with several machine learning methods and binary fingerprint…
    knime > Life Sciences > Events > 2021_03_03_Cheminformatics_with_KNIME_Webinar > ML Prototyping for Bioactivity Data
    7
    knime
  2. Go to item
    Workflow
    Gut Microbiome Analysis of IBD Patients (16S)
    Life sciences Bioinformatics Metagenomics
    +4
    This workflow investigates the composition of gut microbial communities from individuals with inflammatory bowl disease (IBD). Sa…
    knime > Life Sciences > Bioinformatics > Microbiome_Analysis
    3
    knime
  3. Go to item
    Workflow
    Substructure Search with MoSS
    Substructure Search MoSS Chemistry
    +1
    This flow demonstrates the functionality of the MoSS node. It takes a a bunch of molecules (ideally grouped into a least two clas…
    knime > Examples > 08_Other_Analytics_Types > 02_Chemistry_and_Life_Sciences > 01_Example_for_using_MoSS
    2
    knime
  4. Go to item
    Workflow
    Tagging Genes in Disease Related Publications
    Life Sciences Ontologies RDF
    +4
    This example workflow shows how ontology terms can be used to tag biomedical literature. In the first step, the Triple File Reade…
    knime > Life Sciences > Text_Processing > Document_Tagging_Using_Ontology_Terms
    2
    knime
  5. Go to item
    Workflow
    Gene Expression Analysis
    Life Sciences Bioinformatics R
    +2
    In this workflow, we analyze RNA-Seq data from tumors and matched normal tissue from three patients with oral squamous cell carci…
    knime > Examples > 08_Other_Analytics_Types > 02_Chemistry_and_Life_Sciences > 07_Gene_Expression_Analysis
    2
    knime
  6. Go to item
    Workflow
    Column filter flow variable
    Life Sciences Flow variable Column Filter
    This workflow snippet illustrates how to filter multiple columns using a flow variable. For this, we extract the column names of …
    knime > Workflow Snippets > Column filter flow variables
    2
    knime
  7. Go to item
    Workflow
    Reproducible Variant Prioritization
    Bioinformatics Life Sciences Genetic Variation
    Finding disease-causal variants among large amounts of present variants remains a major challenge in next-generation sequencing e…
    knime > Life Sciences > Bioinformatics > Variant_Prioritization
    2
    knime
  8. Go to item
    Workflow
    GET Request Example (Life Sciences)
    REST Genes Life Sciences
    In this workflow snippet, we will use the REST service provided by MyGene.info [1,2] (https://mygene.info/) to obtain a list of h…
    knime > Workflow Snippets > GET Request
    2
    knime
  9. Go to item
    Workflow
    3D View of PDB structures
    PDB Cheminformatics 3D
    +1
    This workflow snippet demonstrates how to query PDB using the PDB nodes from the Vernalis extension and to visualized the results…
    knime > Workflow Snippets > 3D View of PDB structures
    1
    knime
  10. Go to item
    Workflow
    Simple R View
    R plot Life Sciences Dose Response
    This workflow snippet illustrates how to create a simple R plot in the R View node. We use the R library drc to create a dose res…
    knime > Workflow Snippets > Simple R View
    1
    knime
  11. Go to item
    Workflow
    Reactions with RDKit
    Life Sciences Cheminformatics Computational Chemistry
    +1
    This workflow demonstrates the one and two component reaction nodes from the RDKit community extension. This worklfow demonstrate…
    knime > Life Sciences > Cheminformatics > Reactions with RDKit > Reactions_with_RDKit_Hub_MarvinSketch
    1
    knime
  12. Go to item
    Workflow
    01_Chemistry_basics
    Chemistry Interactive View Life Sciences
    +1
    This workflow demonstrates basic cheminformatics functionality within KNIME Analytics Platform: Reading and writing various chemi…
    knime > Education > Courses > L4-CH Introduction to Working with Chemical Data > exercises > 01_Chemistry_basics
    1
    knime
  13. Go to item
    Workflow
    Aligning molecule orientation
    Life Sciences Molecules Orientation
    +1
    This workflow demonstrates how to align molecules according to a substructure, so they are all shown in the same orientation (in …
    knime > Workflow Snippets > Align the orientation of molecules
    1
    knime
  14. Go to item
    Workflow
    Python View Example
    KDE Plot Seaborn Python
    +1
    This workflow shows how to create complex plots using your favorite python package. In this example, seaborn python package is us…
    knime > Workflow Snippets > Python View Example
    1
    knime
  15. Go to item
    Workflow
    Create hyperlinks in Table View
    Life Sciences Data Visualization Weblink
    +1
    This short workflow shows how to create hyperlinks based on pubmed ID's that allow the user to open PubMed directly from the Tabl…
    knime > Workflow Snippets > Create hyperlinks in Table View
    1
    knime
  16. Go to item
    Workflow
    Read and parse multi-line JSONs
    Life Sciences JSON Parsing
    +1
    The workflow snippet demonstrates how to read and parse multi-line JSONs. They are first read in using the Line Reader node, and …
    knime > Workflow Snippets > Read and parse multi-line JSONs
    1
    knime
  17. Go to item
    Workflow
    Advanced Machine Learning - Chemistry Solution
    Machine learning Data mining Classification
    +10
    Solution to the "Advanced Machine Learning Chemistry" exercise for the advanced Life Science User Training - Training a Random Fo…
    rubiocarolina > Public > Solutions > 03. Advanced Machine Learning Chemistry - solution
    1
    rubiocarolina
  18. Go to item
    Workflow
    Plant Disease Prediction
    Deep learning Plant disease Crop science
    +1
    The workflow demonstrates how to do transfer-learning. We are using the pre-trained deep learning network Resnet50 and are repurp…
    knime > Life Sciences > Image_Processing > Plant Disease Prediction > Plant Disease Prediction
    1
    knime
  19. Go to item
    Workflow
    03_Clustering
    Hierarchical Clustering Bit Vector Distances Molecule Descriptors
    +4
    This exercise shows how to perform hierarchical clustering using molecule fingerprints and create an interactive view to pick int…
    greglandrum > Public > Presentations > 2021 > 2021_10_20_RSC_Workshop > 01_Clustering_and_Interactive_Compound_Selection
    1
    greglandrum
  20. Go to item
    Workflow
    Tagging Genes in Disease Related Publications
    Life Sciences Ontologies RDF
    +4
    This example workflow shows how ontology terms can be used to tag biomedical literature. In the first step, the Triple File Reade…
    knime > Digital Healthcare > Tag Genes in Disease related Literature
    1
    knime

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