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Life sciences
Education Chemistry Cheminformatics RDKit Interactive View Bit Vector Distances Hierarchical Clustering Interactive Selection Molecule Descriptors
  1. Go to item
    Workflow
    ML Prototyping for Bioactivity Data
    Cheminformatics Webportal Data Visualization
    +7
    This workflow demonstrates model building for a bioactivity data set with several machine learning methods and binary fingerprint…
    knime > Life Sciences > Events > 2021_03_03_Cheminformatics_with_KNIME_Webinar > ML Prototyping for Bioactivity Data
    7
    knime
  2. Go to item
    Workflow
    Gut Microbiome Analysis of IBD Patients (16S)
    Life sciences Bioinformatics Metagenomics
    +4
    This workflow investigates the composition of gut microbial communities from individuals with inflammatory bowl disease (IBD). Sa…
    knime > Life Sciences > Bioinformatics > Microbiome_Analysis
    3
    knime
  3. Go to item
    Workflow
    Reproducible Variant Prioritization
    Bioinformatics Life Sciences Genetic Variation
    Finding disease-causal variants among large amounts of present variants remains a major challenge in next-generation sequencing e…
    knime > Life Sciences > Bioinformatics > Variant_Prioritization
    2
    knime
  4. Go to item
    Workflow
    Tagging Genes in Disease Related Publications
    Life Sciences Ontologies RDF
    +4
    This example workflow shows how ontology terms can be used to tag biomedical literature. In the first step, the Triple File Reade…
    knime > Life Sciences > Text_Processing > Document_Tagging_Using_Ontology_Terms
    2
    knime
  5. Go to item
    Workflow
    Column filter flow variable
    Life Sciences Flow variable Column Filter
    This workflow snippet illustrates how to filter multiple columns using a flow variable. For this, we extract the column names of …
    knime > Workflow Snippets > Column filter flow variables
    2
    knime
  6. Go to item
    Workflow
    Gene Expression Analysis
    Life Sciences Bioinformatics R
    +2
    In this workflow, we analyze RNA-Seq data from tumors and matched normal tissue from three patients with oral squamous cell carci…
    knime > Examples > 08_Other_Analytics_Types > 02_Chemistry_and_Life_Sciences > 07_Gene_Expression_Analysis
    2
    knime
  7. Go to item
    Workflow
    GET Request Example (Life Sciences)
    REST Genes Life Sciences
    In this workflow snippet, we will use the REST service provided by MyGene.info [1,2] (https://mygene.info/) to obtain a list of h…
    knime > Workflow Snippets > GET Request
    2
    knime
  8. Go to item
    Workflow
    3D View of PDB structures
    PDB Cheminformatics 3D
    +1
    This workflow snippet demonstrates how to query PDB using the PDB nodes from the Vernalis extension and to visualized the results…
    knime > Workflow Snippets > 3D View of PDB structures
    1
    knime
  9. Go to item
    Workflow
    Convert a string to SMILES
    Cheminformatics Data Conversion Molecule
    +1
    This workflow demonstrates the use of the Molecule Type Cast node to convert a string to the SMILES data format. In a second step…
    knime > Workflow Snippets > Convert a string to SMILES
    1
    knime
  10. Go to item
    Workflow
    Create hyperlinks in Table View
    Life Sciences Data Visualization Weblink
    +1
    This short workflow shows how to create hyperlinks based on pubmed ID's that allow the user to open PubMed directly from the Tabl…
    knime > Workflow Snippets > Create hyperlinks in Table View
    1
    knime
  11. Go to item
    Workflow
    01_Chemistry_basics
    Chemistry Interactive View Life Sciences
    +1
    This workflow demonstrates basic cheminformatics functionality within KNIME Analytics Platform: Reading and writing various chemi…
    knime > Life Sciences > Events > 2021_09_13_Vienna_Summer_School > Beginners > exercises > 01_Interactive_visualization
    1
    knime
  12. Go to item
    Workflow
    Reactions with RDKit
    Life Sciences Cheminformatics Computational Chemistry
    +1
    This workflow demonstrates the one and two component reaction nodes from the RDKit community extension. This worklfow demonstrate…
    knime > Life Sciences > Cheminformatics > Reactions with RDKit > Reactions_with_RDKit_Hub_MarvinSketch
    1
    knime
  13. Go to item
    Workflow
    Fetch Data from Database
    Life Sciences Database SQLite
    This example workflow shows how to retrieve data from SQLite database. Specifically, it shows how to select columns from a table …
    knime > Workflow Snippets > Fetch_Data_from_Database
    1
    knime
  14. Go to item
    Workflow
    Plant Disease Prediction
    Deep learning Plant disease Crop science
    +1
    The workflow demonstrates how to do transfer-learning. We are using the pre-trained deep learning network Resnet50 and are repurp…
    knime > Life Sciences > Image_Processing > Plant Disease Prediction > Plant Disease Prediction
    1
    knime
  15. Go to item
    Workflow
    Search for Ethnicity Related Adverse Events of a Drug
    Adverse Events Life Sciences Ontologies
    This workflow allows a user to search literature to analyze relationships between adverse drug event of a certain drug and ethnic…
    knime > Digital Healthcare > Literature Search on Ethnicity related Adverse Events
    1
    knime
  16. Go to item
    Workflow
    Tagging Genes in Disease Related Publications
    Life Sciences Ontologies RDF
    +4
    This example workflow shows how ontology terms can be used to tag biomedical literature. In the first step, the Triple File Reade…
    knime > Digital Healthcare > Tag Genes in Disease related Literature
    1
    knime
  17. Go to item
    Workflow
    NIR Spectral Data Analysis - Visualisation, PCA analysis and Clustering
    Lab data NIR spectroscopy Spectroscopy
    +1
    This workflow takes preprocessed spectral data of multiple samples as an input and: 1. creates line plot visualizations colored a…
    knime > Life Sciences > Laboratory Data > NIR_Spectral_Data_Analysis > 02_NIR_Spectral_Data_Analysis_Clustering_and_Visualization
    1
    knime
  18. Go to item
    Workflow
    Machine Learning Chemistry
    Life Sciences Cheminformatics Machine Learning
    +1
    This workflow snippet demonstrates how to train a bioactivity model using chemical structures. From the chemical structure we gen…
    knime > Workflow Snippets > Machine Learning Chemistry
    1
    knime
  19. Go to item
    Workflow
    01_Chemistry_basics
    Chemistry Interactive View Life Sciences
    +1
    This workflow demonstrates basic cheminformatics functionality within KNIME Analytics Platform: Reading and writing various chemi…
    knime > Education > Courses > L4-CH Introduction to Working with Chemical Data > exercises > 01_Chemistry_basics
    1
    knime
  20. Go to item
    Workflow
    Python View Example
    KDE Plot Seaborn Python
    +1
    This workflow shows how to create complex plots using your favorite python package. In this example, seaborn python package is us…
    knime > Workflow Snippets > Python View Example
    1
    knime

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