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Metagenomics
16S rRNA Amplicon sequence Bioinformatics Life sciences Microbiome Sequence analysis Community Nodes SeqAn
  1. Workflow
    Gut Microbiome Analysis of IBD Patients (16S)
    Life sciences Bioinformatics Metagenomics
    +4
    This workflow investigates the composition of gut microbial communities from individuals with inflammatory bowl disease (IBD). Sa…
    knime > Life Sciences > Bioinformatics > Microbiome_Analysis
    3
    knime
  2. Node / Manipulator
    GASiC
    Community Nodes SeqAn Metagenomics
    Read correction node for the GASiC approach. The node takes a normalized read count vector and a similarity matrix for the genome…
    0
    seqan-knime
  3. Node / Manipulator
    GASiCListReader
    Community Nodes SeqAn Metagenomics
    Reads a list of GASiC mappings into a corresponding table.
    0
    seqan-knime
  4. Node / Manipulator
    GASiCReader
    Community Nodes SeqAn Metagenomics
    Reads abbundance values from data files into a read abbundance table.
    0
    seqan-knime
  5. Node / Manipulator
    Sam2matrix
    Community Nodes SeqAn Metagenomics
    This program determines for each read in the reference file if it has an entry in the provided sam files stating that it mapped. …
    0
    seqan-knime
  6. Node / Manipulator
    Slimm
    Community Nodes SeqAn Metagenomics
    SLIMM Species Level Identification of Microbes from Metagenomes See http://www.seqan.de/projects/slimm for more information. (c) …
    0
    seqan-knime
  7. Node / Manipulator
    SlimmBuild
    Community Nodes SeqAn Metagenomics
    SLIMM Species Level Identification of Microbes from Metagenomes See http://www.seqan.de/projects/slimm for more information. (c) …
    0
    seqan-knime