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Proteomics
OpenMS DIA FDR Database search Differential expression Mass spectrometry Mass-spectrometry Peptide identification
  1. Workflow
    Quantification of protein levels from mass-spectrometry experiments
    Mass-spectrometry OpenMS Proteomics
    +1
    This workflow performs a quantification of proteins from (label-free) mass-spectrometry data. The final results are relative comp…
    openms-team > Blog workflows > Protein label-free quantification
    0
    openms-team
  2. Workflow
    Determine peak lengths of MS1 features
    Proteomics
    Determines the peak lengths (feature lengths) of the given data.
    julianu > Public > Determine_peak_lengths
    0
    julianu
  3. Workflow
    Calculate variable DIA windows from MS1
    Proteomics DIA
    Calculates the sizes for DIA/SWATH windows depending on the intensity of MS1 data from DDA runs (AKA variable or dynamic DIA). Th…
    julianu > Public > Calculate_variable_DIA_windows
    0
    julianu
  4. Workflow
    Peptide identification from mass-spectra
    Mass spectrometry OpenMS Peptide identification
    +3
    Identify peptides by matching mass-spectra to a candidate protein database. It supports a combination of multiple search engines …
    openms-team > Blog workflows > Peptide Identification from MS
    0
    openms-team