PDB Connector Query Only


The PDB Connector Query Only source node provides connections to the RESTful Web Service for searching for information from the Protein Data Bank at http://www.rcsb.org/pdb/rest/search

The user interface dialog options are designed to be a close mimic of the interactive web-based search and reporting options provided at http://www.pdb.org/pdb/search/advSearch.do and the user is encouraged to explore this resource for a full explanation of each search option. Alternatively, use the PDB Connector Query only (XML Query) node to paste an XML query directly from the "Query Details" link in the query results pages on the PDB page. The XML Query is made available as a flow variable ( xmlQuery ) after node execution.

The PDB Connector Query Only node was developed by Vernalis (Cambridge, UK) , based on the original PDB Connector node developed by Enspiral Discovery in collaboration with Vernalis (Cambridge, UK) . For feedback and more information, please contact knime@vernalis.com

Output Ports

  1. Type: Data
    One-column table of PDB IDs that match query


This node is part of the extension

Vernalis KNIME Nodes


Short Link

Drag node into KNIME Analytics Platform