An OpenMS workflow for preprocessing raw data and creating an MGF file containing MS2 spectra, as well as a FeatureQuantificationTable.txt file containing a matrix of all features that have fragmentation patterns. Files needed for the workflow:
1) More than one centroid mzml files (node Input Files)
2) An empty idXML file
Workflow
KNIME_GNPSExport
Used extensions & nodes
Created with KNIME Analytics Platform version 4.3.4
- Go to item
Generic Workflow Nodes for KNIME
Freie Universitaet Berlin, Universitaet Tuebingen, and the GenericWorkflowNodes Team
Version 1.0.0
- Go to item
- Go to item
- Go to item
- Go to item
- Go to item
- Go to item
Loading deployments
Loading ad hoc jobs
Legal
By using or downloading the workflow, you agree to our terms and conditions.