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Structure standardisation for molecules

CheminformaticsStandardisationStructure standardisationChemistry
jenniferh profile image
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Jan 30, 2020 1:55 PM
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This workflow uses RDKit to standardise the input structures. The user can use SDF or SMILES structures and standardise them with various options. Please note that the workflow requires python > = 3.6 with the RDKit and pandas package. For more information and support pelase also look at our github repository. SUPPORT AND FEEDBACK: GitHub Repository https://github.com/PharminfoVienna/Chemical-Structure-Standardisation
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Used extensions & nodes

Created with KNIME Analytics Platform version 4.0.2 Note: Not all extensions may be displayed.
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    KNIME Base Chemistry Types & NodesTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.0.0

    knime
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    KNIME CoreTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.0.2

    knime
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    KNIME Python Integration

    KNIME AG, Zurich, Switzerland

    Version 4.0.0

    knime
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    RDKit KNIME integrationTrusted extension

    NIBR

    Version 3.8.0

    manuelschwarze
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    Vernalis KNIME NodesTrusted extension

    Vernalis Research Ltd, Cambridge, UK

    Version 1.24.4

    vernalis

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