Hub
  • Software
  • Blog
  • Forum
  • Events
  • Documentation
  • About KNIME
Sign in
  • KNIME Hub
  • Nodes
  • Abner tagger (deprecated)
NodeNode / Manipulator

Abner tagger (deprecated)

streamable

This node recognizes biomedical named entities, such as genes, proteins or cells and assigns tags to the corresponding terms like "PROTEIN", "RNA", "DNA", "CELL LINE" or "CELL TYPE". Furthermore it can be specified that found named entities are marked as unmodifiable, meaning that they are not going to be modified by any node afterwards. As underlying named entity recognition software ABNER (A Biomedical named entity recognizer) was used. For more details see: http://pages.cs.wisc.edu/~bsettles/abner/.

Node details

Input ports
  1. Documents input table Type: Data
    The input table containing the documents to tag.
Output ports
  1. Documents output table Type: Data
    An output table containing the tagged documents.

Related workflows & nodes

  1. text2str
    Chemical name text mining. Details on MyExperiment site.
    sauberns > Public > text2str
  2. DrugBank Network Analysis
    The workflow analyses data from DrugBank (http://www.drugbank.ca/) a public available db that combines detailed drug (i…
    knime > Examples > 08_Other_Analytics_Types > 05_Network_Mining > 05_DrugBank_Network_analysis
Extension

This node is part of the extension

KNIME TextprocessingTrusted extension
Version 4.3.0
Short link

KNIME
Open for Innovation

KNIME AG
Hardturmstrasse 66
8005 Zurich, Switzerland
  • Software
  • Getting started
  • Documentation
  • E-Learning course
  • Solutions
  • KNIME Hub
  • KNIME Forum
  • Blog
  • Events
  • Partner
  • Developers
  • KNIME Home
  • KNIME Open Source Story
  • Careers
  • Contact us
Download KNIME Analytics Platform Read more on KNIME Server
© 2021 KNIME AG. All rights reserved.
  • Trademarks
  • Imprint
  • Privacy
  • Terms & Conditions
  • Credits