Abner tagger (deprecated)


This node recognizes biomedical named entities, such as genes, proteins or cells and assigns tags to the corresponding terms like "PROTEIN", "RNA", "DNA", "CELL LINE" or "CELL TYPE". Furthermore it can be specified that found named entities are marked as unmodifiable, meaning that they are not going to be modified by any node afterwards. As underlying named entity recognition software ABNER (A Biomedical named entity recognizer) was used. For more details see: http://pages.cs.wisc.edu/~bsettles/abner/.

Input Ports

  1. Type: Data The input table containing the documents to tag.

Output Ports

  1. Type: Data An output table containing the tagged documents.

Find here

Other Data Types > Text Processing > Enrichment

Make sure to have this extension installed:

KNIME Textprocessing

Update site for KNIME Analytics Platform 3.7:
KNIME Analytics Platform 3.7 Update Site

How to install extensions