Dose Response (R)

Learner

Calculates and visualizes dose response curves. This is achieved by fitting several non-linear regression models to your data.
Measurements are grouped per Compound and Concentration (see Options).
Measurements from a zero concentration are used to calculate the fit but are not displayed in the plot because of its logarithmic scale.
For a conceptual and technical overview have a look at "Bioassay Analysis using R", Ritz and Streibig, 2005, 5:12, Journal of Statistical Software.

IMPORTANT:
This node is using R as back end, make sure that Rserve is running somewhere, and KNIME is accordingly configured (KNIME->Preferences). HCS-Tools Wiki

Input Ports

  1. Type: Data A table with dose response data

Output Ports

  1. Type: Data A table which contains ic50s, model parameters, and error estimates
  2. Type: Image The generated dose response curve plotted as PNG-image
  3. Type: de.mpicbg.knime.scripting.r.port.RPortType2 An R list with all dose response models for further analysis

Find here

Community Nodes > HCS Tools > Screen Mining

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