PDB Downloader (Source) (deprecated)


This node, and the corresponding manipulator node, allows the downloading of structure and sequence files from the RCSB PDB. The formats supported are:

  • PDB
  • mmCIF
  • Structure Factors
  • FASTA Format Sequence
PDB files are cast as PDB cells, and PDBML as XML cells. No checking the the structure IDs is carried out - invalid IDs will return cells containing missing values. WARNING - the PDBx option can result in very large tables!

This node was developed by Vernalis (Cambridge, UK). For feedback and more information, please contact knime@vernalis.com

Output Ports

  1. Type: Data Output table with the downloaded file(s)

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Make sure to have this extension installed:

Vernalis KNIME Nodes

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