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ProteinQuantifier

Community NodesOpenMSQuantitation
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Compute peptide and protein abundances

Web Documentation for ProteinQuantifier

Node details

Input ports
  1. Type: URI Object
    in [featureXML,consensusXML,idXML]
    Input file [featureXML,consensusXML,idXML]
  2. Type: URI Object
    protein_groups [idXML]
    Protein inference results for the identification runs that were used to annotate the input (e.g. via the ProteinInference tool).#br#Information about indistinguishable proteins will be used for protein quantification. [idXML,opt.]
  3. Type: URI Object
    design [tsv]
    input file containing the experimental design [tsv,opt.]
Output ports
  1. Type: URI Object
    out [csv]
    Output file for protein abundances [csv]
  2. Type: URI Object
    peptide_out [csv]
    Output file for peptide abundances [csv]
  3. Type: URI Object
    mztab [mzTab]
    Output file (mzTab) [mzTab]

Extension

The ProteinQuantifier node is part of this extension:

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