Compute peptide and protein abundances

Web Documentation for ProteinQuantifier

Input Ports

  1. Type: URI Object Input file [featureXML,consensusXML,idXML]
  2. Type: URI Object Protein inference results for the identification runs that were used to annotate the input (e.g. from ProteinProphet via IDFileConverter or Fido via FidoAdapter).#br#Information about indistinguishable proteins will be used for protein quantification. [idXML,opt.]

Output Ports

  1. Type: URI Object Output file for protein abundances [csv,Inactive]
  2. Type: URI Object Output file for peptide abundances [csv,Inactive]

Find here

Community Nodes > OpenMS > Quantitation

Make sure to have this extension installed:


Update site for KNIME Analytics Platform 3.7:
KNIME Community Contributions (3.7)

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