ProteinQuantifier

Compute peptide and protein abundances

Web Documentation for ProteinQuantifier

Input ports

1. Type: URI Object
   in [featureXML,consensusXML,idXML]
   Input file [featureXML,consensusXML,idXML]
2. Type: URI Object
   protein_groups [idXML]
   Protein inference results for the identification runs that were used to annotate the input (e.g. via the ProteinInference tool).#br#Information about indistinguishable proteins will be used for protein quantification. [idXML,opt.]
3. Type: URI Object
   design [tsv]
   input file containing the experimental design [tsv,opt.]

Output ports

1. Type: URI Object
   out [csv]
   Output file for protein abundances [csv]
2. Type: URI Object
   peptide_out [csv]
   Output file for peptide abundances [csv]
3. Type: URI Object
   mztab [mzTab]
   Output file (mzTab) [mzTab]