RDKit Highlighting Atoms (deprecated)


Creates a SVG column showing a molecule with highlighted atoms based on information in the input table. A molecule column as well as a column with a list of the atoms to be highlighted needs to be provided. Note: This node has been replaced with the RDKit Molecule Highlighting node.

Input Ports

  1. Type: Data Table with an RDKit Molecules and a List of Atoms to be highlighted.

Output Ports

  1. Type: Data The input table with an additional column that shows the highlighted atoms in an SVG molecule graphic.

Find here

Community Nodes > RDKit > Viewing

Make sure to have this extension installed:

RDKit KNIME integration

Update site for KNIME Analytics Platform 3.7:
KNIME Community Contributions (3.7)

How to install extensions