Waehlby Cell Clump Splitter
Waehlby Cell Clump Splitter performs object split and merge by shape on a labeling. This may greatly improve quality of a labeling, especially for cell segmentation.
If your Image contains a lot of holes, you may want to consider preprocessing the input with the "Fill Holes" node or other kinds of hole filling.
The method used was mainly inspired by a paper by C. Waehlby, "Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections", and the method use by CellCognition (cellcognition.org).
- Type: Data Table containing labeling and image columns. Which will be used can be chosen in the "Column Selection" tab.
- Type: Data Table containing or consiting of the refined labeling. The resulting table can be modified over the "Column Selection" tab.
Community Nodes > KNIME Image Processing > Labeling
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KNIME Image Processing
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KNIME Community Contributions (3.7)