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  • 3D Molecule Viewer
ComponentComponent

3D Molecule Viewer

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The component can be used to visualize molecular data using the JavaScript library 3Dmol.js (https://3dmol.csb.pitt.edu/index.html). The required input data types are either PDB, SDF or Molfile. The view provides the following options for the user to select: - atom styles (e.g. Stick, Line, Cross, Sphere and for PDB data types also Cartoon) - show heteroatoms for PDB data and select heteroatom style (Stick, Line, Cross and Sphere) If the component is used alone, simple paging through the rows of the input table is possible by unchecking the "subscribe to selection" box. If combined in a component with another KNIME JavaScript View, e.g. the Table View, the 3D Molecule Viewer component will visualize selected rows from the Table View if the "subscribe to selection" box is checked. IMPORTANT: If executed the first time, the component needs to access the internet to load the required JavaScript library 3Dmol.js. The library will be cached in the data area of the workflow for following executions.

Component details

Input ports
  1. Type: Table
    data
    data table containing PDB, SDF or Molfile column types

Used extensions & nodes

Created with KNIME Analytics Platform version 4.3.0 Note: Not all extensions may be displayed.
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    KNIME Base nodes Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.3.0

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    KNIME JavaScript Views Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.3.0

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    KNIME REST Client Extension Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.3.0

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Legal

By using or downloading the component, you agree to our terms and conditions.

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