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ComponentComponent

PDB Data Extractor

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The PDB Data Extractor component receives PDB IDs as input and fetches additional data about the provided structures like sequences or references to other databases like UniProt or PubMed. The component is using the PDB web service. More information about the PDB database and the editable web service fields in the request can be found here: https://academic.oup.com/nar/article/28/1/235/2384399 https://www.rcsb.org/pdb/results/reportField.do

Component details

Input ports
  1. Data Type: Data
    Input table containing an PDB ID column
Output ports
  1. Data Type: Data
    Output table containing the PDB web service output

Used extensions & nodes

Created with KNIME Analytics Platform version 4.1.2
  • KNIME Core Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.1.2

  • KNIME Quick Forms Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.1.2

  • KNIME REST Client Extension Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.1.1

  • KNIME XML-Processing Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.1.0

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