PDB Data Extractor

Component

Last update:

The PDB Data Extractor component receives PDB IDs as input and fetches additional data about the provided structures like sequences or references to other databases like UniProt or PubMed. The component is using the PDB web service. More information about the PDB database and the editable web service fields in the request can be found here: https://academic.oup.com/nar/article/28/1/235/2384399 https://www.rcsb.org/pdb/results/reportField.do

Component details

Ports Options Views

Input ports

Type: Data
Input table containing an PDB ID column

Output ports

Type: Data
Output table containing the PDB web service output

PDB Data Extractor

Component details

Input ports

Output ports

Used extensions & nodes

KNIME Core Trusted extension

KNIME Quick Forms Trusted extension

KNIME REST Client Extension Trusted extension

KNIME XML-Processing Trusted extension

KNIME Core

KNIME Quick Forms

KNIME REST Client Extension

KNIME XML-Processing