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PDB Data Extractor

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Versionv1.0Latest, created on 
Oct 20, 2023 1:29 PM
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The PDB Data Extractor component receives PDB IDs as input and fetches additional data about the provided structures like sequences or references to other databases like UniProt or PubMed. The component is using the PDB web service. More information about the PDB database and the editable web service fields in the request can be found here: https://academic.oup.com/nar/article/28/1/235/2384399 https://www.rcsb.org/pdb/results/reportField.do

Component details

Input ports
  1. Type: Table
    Input table containing an PDB ID column
Output ports
  1. Type: Table
    Output table containing the PDB web service output

Used extensions & nodes

Created with KNIME Analytics Platform version 4.1.2
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    KNIME CoreTrusted extension

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    Version 4.1.2

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    KNIME Quick FormsTrusted extension

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    Version 4.1.2

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    KNIME REST Client ExtensionTrusted extension

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    KNIME XML-ProcessingTrusted extension

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    Version 4.1.0

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This component does not have nodes, extensions, nested components and related workflows

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