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  • Sequence Logo
ComponentComponent

Sequence Logo

Last update: 

The component receives aligned DNA sequences as input and creates an interactive view that contains a sequence logo created with the Generic JavaScript View and a Table View. The sequence logo displays the nucleotides in each position and the size indicates their frequency in the sequences. By selecting nucleotides from the logo the samples in which they occur get selected in the Table View. For a more detailed description have a look at: https://www.knime.com/blog/motifs-and-mutations-the-logic-of-sequence-logos

Component details

Input ports
  1. Port 1 Type: Data
    Input table containing a column with DNA sequences.

Used extensions & nodes

Created with KNIME Analytics Platform version 4.1.3
  • KNIME Core Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.1.3

  • KNIME JavaScript Views Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.1.2

  • KNIME Quick Forms Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.1.3

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