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  • 07_Pubmed_Author_Network_Analysis
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PubMed Network Analysis

PubMed Network Mining

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Prerequisites to run the workflow with other data than in the example: 1. Generate a suitable query on PubMed webpage (http://www.ncbi.nlm.nih.gov/pubmed) , e.g. (("nonalcoholic"[all fields] OR "non-alcoholic"[all fields] OR "non alcoholic"[all fields]) AND "steatohepatitis"[all fields]) OR (("fat"[all fields] OR "liver"[all fields] OR "hepatic"[all fields]) AND NASH[Title/Abstract]) 2. Download hits from PubMed webpage ("Sent to" > "File" > "Format CSV") as CSV file 3. The downloaded CSV file is input for the FileReader node (delimiter = ","; "allow short line"; "read column header") in this workflow.

External resources

  • PubMed
  • Network Mining

Used extensions & nodes

Created with KNIME Analytics Platform version 4.1.0
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    KNIME Core Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.1.0

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    KNIME Math Expression (JEP) Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.1.0

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    KNIME Network Mining Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.1.0

  • Go to item
    KNIME Quick Forms Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.1.0

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