Hub
Pricing About
WorkflowWorkflow

MMP Databased Example with Fingerprint Databasing

Matched Molecular PairsMMPMMPAFingerprintDatabase
knime profile image
Draft Latest edits on 
Jul 11, 2017 1:38 PM
Drag & drop
Like
Download workflow
Workflow preview
This is a more complex Matched Molecular Pairs (MMP) example, in which we demonstrate storing fragmentations and transforms in a database, and adding new fragmentations and pairs from new molecules, as might be performed with routine updates to a registration or compound database. The datasets are based on the same data as the 'Simple MMP Example'. The first represents an existing compound set, and the second a set of new compounds (seeded with a few duplicates). We use the multi-cut version of the node to perform 1-10 cuts on the 'existing' set first and we generate pair transforms. Fragments, transforms and failed rows are all databased for later recall (here we use an sqlite db in the same folder that contains the workflow - run this locally to create the DB file - it is quite big!) The Vernalis fingerprint nodes are used to regenerate fingerprint columns from the databased representations
Loading deploymentsLoading ad hoc jobs

Used extensions & nodes

Created with KNIME Analytics Platform version 4.1.0 Note: Not all extensions may be displayed.
  • Go to item
    KNIME CoreTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.1.0

    knime profile image
    knime
  • Go to item
    KNIME DatabaseTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.1.0

    knime profile image
    knime
  • Go to item
    Vernalis KNIME NodesTrusted extension

    Vernalis Research Ltd, Cambridge, UK

    Version 1.24.4

    vernalis

Legal

By using or downloading the workflow, you agree to our terms and conditions.

KNIME
Open for Innovation

KNIME AG
Talacker 50
8001 Zurich, Switzerland
  • Software
  • Getting started
  • Documentation
  • Courses + Certification
  • Solutions
  • KNIME Hub
  • KNIME Forum
  • Blog
  • Events
  • Partner
  • Developers
  • KNIME Home
  • Careers
  • Contact us
Download KNIME Analytics Platform Read more about KNIME Business Hub
© 2025 KNIME AG. All rights reserved.
  • Trademarks
  • Imprint
  • Privacy
  • Terms & Conditions
  • Data Processing Agreement
  • Credits