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Automated Database Report

Life ScienceCheminformaticsDatabaseReporting
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Jan 4, 2021 10:16 AM
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This workflow demonstrates the access to a database containing chemical structures and assay results, the calculation of chemical properties and subsequent evaluation of the Lipinski RO5. The results are summarized in a report that also contains a list of the newest database entries. The workflow execution can be scheduled to happen on a regular basis to create a report for documentation (see the link below for more information on workflow scheduling). Note that the scheduling functionality requires a server setup.

External resources

  • Server workflow scheduling
Loading deploymentsLoading ad hoc jobs

Used extensions & nodes

Created with KNIME Analytics Platform version 4.3.0
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    KNIME Base Chemistry Types & NodesTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.3.0

    knime profile image
    knime
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    KNIME Base nodesTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.3.0

    knime profile image
    knime
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    KNIME-CDK

    University Konstanz and EBI

    Version 1.5.600

    egonw
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    KNIME DatabaseTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.3.0

    knime profile image
    knime
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    KNIME JavaScript ViewsTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.3.0

    knime profile image
    knime
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    KNIME Reporting RuntimeTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.3.0

    knime profile image
    knime
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    RDKit KNIME integrationTrusted extension

    NIBR

    Version 4.1.0

    manuelschwarze

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