- Type: URI Objectin [mzML]Input file containing the spectra. [mzML]
- Type: URI Objectconsensus [consensusXML]Input file containing the linked mass peaks. [consensusXML]
- Type: URI Objectdatabase [fasta]Input file containing the protein database. [fasta]
- Type: URI Objectdecoy_database [fasta]Input file containing the decoy protein database. Decoys can also be included in the normal database file instead (or additionally). [fasta,opt.]
Node / Manipulator
OpenPepXL
Node details
Input ports
Output ports
- Type: URI Objectout_idXML [idXML]Results in idXML format (at least one of these output parameters should be set, otherwise you will not have any results) [idXML]
- Type: URI Objectout_mzIdentML [mzid]Results in mzIdentML (.mzid) format (at least one of these output parameters should be set, otherwise you will not have any results) [mzid]
- Type: URI Objectout_xquestxml [xquest.xml]Results in the xquest.xml format (at least one of these output parameters should be set, otherwise you will not have any results). [xquest.xml]
- Type: URI Objectout_xquest_specxml [spec.xml]Matched spectra in the xQuest .spec.xml format for spectra visualization in the xQuest results manager. [spec.xml]
Extension
The OpenPepXL node is part of this extension:
- Go to item
Related workflows & nodes
- Go to item
- Go to item
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