CometAdapter

Annotates MS/MS spectra using Comet.

Web Documentation for CometAdapter

Input ports

1. Type: URI Object
   in [mzML]
   Input file [mzML]
2. Type: URI Object
   database [FASTA]
   FASTA file [FASTA]
3. Type: URI Object
   default_params_file [txt]
   Default Comet params file. All parameters of this take precedence. A template file can be generated using 'comet.exe -p' [txt,opt.]

Output ports

1. Type: URI Object
   out [idXML]
   Output file [idXML]
2. Type: URI Object
   pin_out [tsv]
   Output file - for Percolator input [tsv]