Uses MSstatsConverter to make tables that are processed in short R code scripts in various nodes.
A consensusXML file from an LFQ workflow is required as input.
The outputs are several images and tables accessible through richt clicking the R View and R to Table nodes.
Example input data:
To download the data from the archive, check the box on the folder and click on the download button (arrow) on the top left.
Download and unpack the "iPRG2015" data into a directory "Example_data/iPRG2015" next to this workflow inside your KNIME workspace.
Workflow
MSstats_statPostProcessing_iPRG2015
External resources
Used extensions & nodes
Created with KNIME Analytics Platform version 4.7.1
Note: Not all extensions may be displayed.
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Generic Workflow Nodes for KNIME
Freie Universitaet Berlin, Universitaet Tuebingen, and the GenericWorkflowNodes Team
Version 1.0.0
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KNIME Interactive R Statistics Integration
KNIME AG, Zurich, Switzerland
Versions 4.1.1, 4.7.0
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