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UpdateObjective

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Jul 11, 2022 9:45 AM
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The component to update the objective definition for the model. During simulation model maximize the linear combination of reaction fluxes. This node takes the coefficients for such combination from the input table and update model accordingly. Reactions are connected to table rows by column selected as **Reaction ID** in the configuration dialog. In the case when the value in the **Reaction ID** column do not match any reaction in the model, that row will be omitted and no error or exception will be raised. If no reactions matches the table model will be returned unchanged.

Component details

Input ports
  1. Type: Python
    model
    Cobra Model object from other FBA components.
  2. Type: Table
    reactions
    table of reaction objective function coefficients
Output ports
  1. Type: Python
    model
    Cobra Model object with new objective

Used extensions & nodes

Created with KNIME Analytics Platform version 4.3.4
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    KNIME Base nodesTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.3.4

    knime
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    KNIME Python Integration

    KNIME AG, Zurich, Switzerland

    Version 4.3.3

    knime
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    KNIME Quick FormsTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.3.3

    knime

This component does not have nodes, extensions, nested components and related workflows

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