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DRC_biochemical_toECBD

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Feb 14, 2022 11:43 AM
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This workflow can be used to fit dose-response curves from normalised biochemical assay data (%Inhibition) using the HCS extension. This workflow needs R-Server to run in the back-end. Start R and run the following command: library(Rserve); Rserve(args = "--vanilla") IC50 values will not be extrapolated outside the tested concentration range For activity classification the following criteria are applied: - maximum (average % inhibion) >25 % and slope is >0 and IC50 > 5 µM or - minimum (average % inhibion) >75 % Results are formatted for upload to the European Chemical Biology Database (ECBD)
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Used extensions & nodes

Created with KNIME Analytics Platform version 4.5.2
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    KNIME Base nodesTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.5.2

    knime
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    KNIME ExpressionsTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.5.1

    knime
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    KNIME HCS ToolsTrusted extension

    Max Planck Institute of Molecular Cell Biology and Genetics (MPI-CBG), Dresden, Germany

    Version 4.0.0

    mpicbg-tds
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    KNIME Math Expression (JEP)Trusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.5.0

    knime

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