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06_Find_Scaffolds_And_Sidechains

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Jun 20, 2025 2:54 PM
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Finding scaffolds and sidechains

Demonstrates use of RDKit functionality to identify the likely scaffold for a set of compounds from a paper and then determine the sidechains from the molecules matching that scaffold. The results are presented using the RDKit's molecular highlighting functionality.

The dataset used in this example workflow was taken from ChEMBL (https://www.ebi.ac.uk/chembl/).

Requirements:
- RDKit Community Nodes
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Used extensions & nodes

Created with KNIME Analytics Platform version 5.4.4
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    KNIME Base nodesTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 5.4.4

    knime profile image
    knime
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    RDKit Nodes FeatureTrusted extension

    Novartis

    Version 5.2.0

    manuelschwarze

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