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PDB Query and download

PDBConnectorPDB Advanced QueryPDB Custom ReportRCSB PDBPDB file
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May 6, 2020 11:53 AM
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This workflow demonstrates how to connect to the Protein Data Bank (PDB) using KNIME nodes. In the first section, the new PDB Connector nodes are used to build a query and generate a custom report. The PDB Downloader node is the used to save local copies. The last section shows an example of how to load and perform operations on local files.

External resources

  • RCSB PDB
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Used extensions & nodes

Created with KNIME Analytics Platform version 4.1.0
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    KNIME CoreTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.1.0

    knime profile image
    knime
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    Vernalis KNIME NodesTrusted extension

    Vernalis Research Ltd, Cambridge, UK

    Version 1.24.4

    vernalis

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