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Convert Human Genome Assembly

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Sep 23, 2020 6:27 AM
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This component converts the coordinates between different assembly versions of the human genome. This is done using an endpoint from Ensembl's REST API (http://rest.ensembl.org/documentation/info/assembly_map).

Component details

Input ports
  1. Type: Table
    Input table with the coordinates to be mapped from one assembly to another.
Output ports
  1. Type: Table
    Output table with the mapped coordinates.

Used extensions & nodes

Created with KNIME Analytics Platform version 4.2.1
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    KNIME Base nodesTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.2.2

    knime
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    KNIME ExpressionsTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.2.1

    knime
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    KNIME Quick FormsTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.2.1

    knime
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    KNIME REST Client ExtensionTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.2.0

    knime
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    KNIME XML-ProcessingTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.2.1

    knime

This component does not have nodes, extensions, nested components and related workflows

Legal

By using or downloading the component, you agree to our terms and conditions.

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