Cell Segmentation with Neural Networks

Example workflow illustrating the use of the Cellpose Segmentation component node.

DISCLAIMER: In order to use this workflor, you need to manually install the "KNIME Image Processing - Python Extensions" available at kni.me/e/CjujPH_iaJn-CwNl

The author of this workflow is not affiliated with the authors of Cellpose, nor with KNIME. Please refer to the original Cellpose paper for information about Cellpose, and to the image.sc forum for questions.

The Cellpose project is Copyright © 2020 Howard Hughes Medical Institute by its authors and released under BSD 3-Clause "New" or "Revised" License (github.com/MouseLand/cellpose/blob/master/LICENSE).

Reference:

Stringer, C., Wang, T., Michaelos, M. et al. Cellpose: a generalist algorithm for cellular segmentation. Nat Methods 18, 100–106 (2021). https://doi.org/10.1038/s41592-020-01018-x