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UpdateMedium

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Jul 11, 2022 9:45 AM
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The component uses external table to define new medium for the model. In Cobra growth medium specified by pair exchange ReactionID and Flux bound. Reactions are connected to table rows by column selected as **Reaction ID** in the configuration dialog. Only exchange reactions are alowed to contribute to the medium definition. In the case when the value in the **Reaction ID** column do not match any exchange reaction in the model, that row will be omitted and no error or exception will be raised. If no exchange reactions matches the table, the model will be returned unchanged.

Component details

Input ports
  1. Type: Python
    medium
    exchange reaction table to use as a new medium definition
  2. Type: Table
    model
    Cobra Model object from other FBA components
Output ports
  1. Type: Python
    model
    Cobra Model object with medium definition updated

Used extensions & nodes

Created with KNIME Analytics Platform version 4.3.4
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    KNIME Base nodesTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.3.4

    knime
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    KNIME Python Integration

    KNIME AG, Zurich, Switzerland

    Version 4.3.3

    knime
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    KNIME Quick FormsTrusted extension

    KNIME AG, Zurich, Switzerland

    Version 4.3.3

    knime

This component does not have nodes, extensions, nested components and related workflows

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