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PMI Calculation (deprecated)

Community NodesVernalisChemistryPrincipal Moments of Inertia (PMIs)

This node has been deprecated and its use is not recommended. Please search for updated nodes instead.

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This node calculates the Principle Moments of Inertia (PMIs) for a molecule, and the normalised ratios (nPMIs) I1/I3 and I2/I3, which are widely used in the "PMI plot" to describe molecular shape.

For further information on the PMI plot see:

  1. Wolfgang H. B. Sauer and Matthias K. Schwarz " Molecular Shape Diversity of Combinatorial Libraries: A Prerequisite for Broad Bioactivity ", J. Chem. Inf. Comput. Sci. 2003, 43 , 987-1003 DOI: 10.1021/ci025599w

This node was developed by Vernalis Research . For feedback and more information, please contact knime@vernalis.com

Node details

Input ports
  1. Type: Table
    Molecules
    Input sdf or mol molecules
Output ports
  1. Type: Table
    PMIs
    The input port with PMIs and/or nPMIs calculated

Extension

The PMI Calculation (deprecated) node is part of this extension:

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Related workflows & nodes

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